Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq61401 488 1e-133 >seq61401 Length=4951 Score = 488 bits (540), Expect = 1e-133 Identities = 498/647 (77%), Gaps = 2/647 (0%) Strand=Plus/Plus Query 30548 GCTCGGCGACACGCTGCGGCTCGAACCGGCCCTGGCCAAATACACGCGGCGCAAGGCCGA 30607 ||| |||| ||||| |||| | | ||| | ||| ||||||| ||| ||| | |||| Sbjct 3196 GCTAGGCGGTACGCTCGCGCTCAAGCGGGCGCCGGCGAAATACATGCGCCGCGCGACCGA 3255 Query 30608 TTT-CAGTGGCTTTGTGTACGTGAACGGCTGGCAGGACAAGCACGAGTTCGAGCCGGGCA 30666 | | ||| | ||| | | || |||||| ||||| | ||| |||||||| |||||| Sbjct 3256 TCTGCAGCG-CTTCTTTCAGGTCAACGGCATACAGGAAAGGCATGAGTTCGAACCGGGCG 3314 Query 30667 GCGTGTTCCAGCTCATGCGACCGGACATCAACCAGGAGGTGTACGGCCTGCCCGAATATC 30726 | || | | ||| ||| || ||||| ||||||||||| |||||||||||||||| Sbjct 3315 TGATCTTTAACTTAATGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATC 3374 Query 30727 TCAGCTCGCTTCACTCGGCCTGGCTGAACGAGTCGTCGACGCTGTTCCGGCGGAAGTATT 30786 || || |||| ||| |||| ||| ||||||||||| |||||||||| || || || | Sbjct 3375 TCGGCGCGCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACT 3434 Query 30787 ACGAAAACGGTAGCCACGCCGGCTTCATCCTCTACATGACCGACGCGGCGCAGAAGCAGG 30846 | || |||| ||||||||||| ||||| |||||||| ||||| |||||||| |||| Sbjct 3435 ATGAGAACGACTCGCACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGG 3494 Query 30847 AGGATGTCGACAACATGCGCACGGCGTTGAAGAACGCGAAGGGGCCGGGCAATTTCCGCA 30906 | || || ||| ||||| |||| |||| | ||||| |||||||| ||||||| Sbjct 3495 AAGACGTAGACGCGTTGCGCGAGGCGCTGAAAATTAGCAAGGGACCGGGCAACTTCCGCA 3554 Query 30907 ACGTGTTCATGTACGCGCCGGGCGGGAAAAAGGACGGTATCCAGCTCATCCCAGTGTCCG 30966 || ||||||||||||||||| ||| |||||||| || || ||||| ||||| ||||||| Sbjct 3555 ACCTGTTCATGTACGCGCCGAACGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCG 3614 Query 30967 AGGTCGCGGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCGACGACCTGCTCG 31026 ||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct 3615 AGGTCACGGCGAAGGACGAGTTTTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCG 3674 Query 31027 CCGCGCATCGCGTGCCGCCGCAACTGCTCGGTATCGTGCCGAGCAATTCGGGCGGGTTCG 31086 |||| |||||||| ||||||||||| |||| | |||||||||||| | |||||||| | Sbjct 3675 CCGCACATCGCGTACCGCCGCAACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTG 3734 Query 31087 GCACGCCGGACACCGCGGCGCGCGTGTTCGGTCGCAACGAAATCAAGCCGCTGCAGGCCC 31146 | | | ||||| ||||| || |||||| ||||||||| | ||||| ||| | Sbjct 3735 GGGCCGCAGACACGGCGGCCGAGGTATTCGGTGCGAACGAAATCGAACCGCTACAGAGTC 3794 Query 31147 GCTTCGCCGAGCTGAACGACTGGCTCGGCGAAGAGGTCGTGTTGTTC 31193 |||| | |||| | || ||| ||||||| ||||||||| |||| Sbjct 3795 GCTTTACGCAGCTCGATGAGTGGATCGGCGACGAGGTCGTGCGGTTC 3841 Score = 320 bits (354), Expect = 4e-83 Identities = 557/808 (69%), Gaps = 7/808 (1%) Strand=Plus/Plus Query 29191 TTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGCGGCTGACC 29250 || ||| | ||||| | ||||| ||||||||||||||||| | ||| | ||| Sbjct 1829 TTTCGCAAACTGAACAAGGTTGCATCGGGCATGGCGATGCATAGCAAGTGGAGAAAAACC 1888 Query 29251 TACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCGGCGCCGAT 29310 || ||| |||||| ||||| | | ||||| || || | ||||||| ||||| | || Sbjct 1889 TATTTCTCCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGACCAT 1948 Query 29311 GCGAATCGTGGGCGCGCGCCTAGCGATCGTATCCAGATCGACACGAGC-CACGAAGCGCT 29369 || || || ||||| ||||| | | || | ||| ||| ||| | ||||| Sbjct 1949 TTCAACCGCGGCCGCGCTAAGGTCGATCATCTGCACCTGGACGT-AGCACACAAGGCGCT 2007 Query 29370 CGTGCGAGGCATGCTGGGCGAGGACGAGCAGTGGCGTCAGATCGTCACCGTACTCGATGC 29429 || || ||| ||| ||||||| ||||||||| |||||||| || || || || Sbjct 2008 CGCACGCGGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAAGACGC 2067 Query 29430 GATCGAGGGCGGCTGCGACTTGTTCGACCTGGA-GAGACTTCGGCGCCGGTACAGTGCAG 29488 | | | ||||| ||| || ||||||| || | ||| || ||| | |||||| | | Sbjct 2068 GGTTGCAGGCGGTTGCAACCTGTTCGATCTTGCCGAG-CTGGGGCTCGAGTACAGCCCCG 2126 Query 29489 AGGCTTTCGCGAACCTGCTGATGTGCCAGTTCATCGACGATTCGGTGTCGGTGTTCAAGC 29548 ||| | ||||||| ||||||| || ||||| ||||| ||| ||| | ||| || Sbjct 2127 AGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTCCCGC 2186 Query 29549 TGGCCGAGCTGCAGCGCTGCATGGTCGACTCGTGGGAGGAATGGGCCGACGACTTCTCGC 29608 | ||||| |||||||||||||||| || ||||||||| | ||| | |||||| || Sbjct 2187 TCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACGGG---AAGACTTCAAGC 2243 Query 29609 NNNNNNNNNNNCGTCCGTTCGGCTATCGCGAGGTGTGGGTTGGCTACGATCCGGCGCTGA 29668 || || |||| || || || ||||| ||||| || || ||| | Sbjct 2244 CCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGACCCAGCGTTAT 2303 Query 29669 CTGGCGACTCAGCCGGTCTCGTTGTCGTGGCGCCGCCGCGTGTCGAGGGTGGGACGTTCC 29728 |||||||| ||||| || |||| |||||||| ||| || ||||| | ||| | Sbjct 2304 ACGGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAGTTTC 2363 Query 29729 GCGTGCTCGAACGTCACCAGTTCCGCGGCAACGACTTCGAGGAACAGGCCGCGGCGATCG 29788 ||||||| | | || | ||||||| |||||||| | ||||||| || ||| Sbjct 2364 GCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGCAATCA 2423 Query 29789 AACAGATCACGCAGCGCTACAACGTCGGCTATATCGCGATCGACACGACGGGCATGGGGC 29848 | ||||| ||| | |||||| | || || |||||||||||||| ||||| || | Sbjct 2424 GGCGCATCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACCGGCATCGGCC 2483 Query 29849 AGGGCGTCTATCAGCTCGTGCGGAAGTTCTACCCGGCGGCCGTTGCATTGAACTACTCGC 29908 ||| ||||| |||||||| || ||||||| ||| || || || | |||||||||| Sbjct 2484 AGGATGTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTTAACTACTCGC 2543 Query 29909 CCGAGGTCAAAACTCGCCTTGTGCTGAAGGGGCAATCCGTCATCCGCAACGGCCGCCTGC 29968 | ||||||||| || || || || || || | || || ||| |||| ||||| || Sbjct 2544 CAGAGGTCAAAGGGCGGCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAGGGCCGACTCG 2603 Query 29969 AATTCGACGCGGGATGGACCGACCTGGC 29996 ||||||| || |||||||| || || || Sbjct 2604 AATTCGATGCCGGATGGACGGATCTCGC 2631 Score = 178 bits (196), Expect = 3e-40 Identities = 221/302 (73%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 8257 AAATGCGACCGGTGCCGCTCGGTCGTCGGATCGTCGCGCATTTCGAGGTCGAGCCCGGTT 8316 ||||| || |||||| ||||| |||||||||||||| | ||| | || || |||| Sbjct 1411 AAATGAGAGCGGTGCTTGTCGGTGGTCGGATCGTCGCGGACTTCCATTTCCAGAGAGGTT 1470 Query 8317 GTGAATCCGCCGTCACTGTCGATGGTGTGCGTGGCCTTCTTCACGAGCCACGCGGTCTCG 8376 || | || | || | ||| |||||||| ||||||||||||||||||| || ||| Sbjct 1471 GTCAGGCCCGCTTCGC---CGAGCGTGTGCGTTGCCTTCTTCACGAGCCACGGTGTTTCG 1527 Query 8377 TCGATTTCCGGTTTGAAGCCGGACAGCGTGACCGGCATTTCGGGGAACAGATCGGCGCGG 8436 | |||||||||||| ||||||| | | ||||||| || ||||| | || | |||| Sbjct 1528 TTGATTTCCGGTTTTAAGCCGGCGACATTTACCGGCAGCTCCGGGAATACCTCAGGGCGG 1587 Query 8437 CCGCGCGCAAGCGAATAGCGCATCGTCGCCTGGCTACGCTGCATGCGCTTGAACTCGGCC 8496 ||| |||| | || | ||||||||||| |||||| |||| |||| |||| Sbjct 1588 CCGAGCGCGCGTTGGTAAGAAAATGTCGCCTGGCTGCGCTGCGTGCGTGCGAACGCGGCT 1647 Query 8497 TGCGCAGCCGCGCGAGCCTCTGCCTCCGTCGCGTAGTCCTCCGGCAACACTTTCACATTC 8556 | || |||||||| || || | || ||||| ||||| |||||||| ||||| || ||| Sbjct 1648 CGAGCTGCCGCGCGTGCTTCGTCTTCGGTCGCATAGTCTTCCGGCAAAACTTTAACGTTC 1707 Query 8557 TT 8558 || Sbjct 1708 TT 1709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129530196757180