Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq61401 691 0.0 >seq61401 Length=4951 Score = 691 bits (766), Expect = 0.0 Identities = 649/832 (78%), Gaps = 3/832 (0%) Strand=Plus/Plus Query 25509 TGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAA 25568 ||||| |||| |||||| | || ||||||||||||||||||||||||||||| | || Sbjct 1817 TGGGTCGGCGGTTTTCGCAAACTGAACAAGGTTGCATCGGGCATGGCGATGCATAGCAAG 1876 Query 25569 TGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGG 25628 ||| |||| || ||||| || ||||| |||||||| ||| ||||| || | |||||| Sbjct 1877 TGGAGAAAAACCTATTTCTCCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGG 1936 Query 25629 AGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATATTTCG 25688 | ||||| || | |||| | |||||||| |||| |||||| | || || || | | Sbjct 1937 ACCGGCGACCATTTCAACCGCGGCCGCGCTAAGGTCGATCATCTGCACCTGGACGTAGCA 1996 Query 25689 CACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACG 25748 ||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| Sbjct 1997 CACAAGGCGCTCGCACGCGGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACG 2056 Query 25749 GTCGAGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAA 25808 ||||| || || || || ||||||||| || |||||||| | | ||||||| | || || Sbjct 2057 GTCGAAGACGCGGTTGCAGGCGGTTGCAACCTGTTCGATCTTGCCGAGCTGGGGCTCGAG 2116 Query 25809 TACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCG 25868 |||||| | ||||||| ||| |||||||||||||| || || ||||| || || ||| Sbjct 2117 TACAGCCCCGAGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCG 2176 Query 25869 ATCTTTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGAC 25928 || || ||||||||||| |||| ||||||||||| || |||||||| | || || Sbjct 2177 ATTTTCCCGCTCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACGG---GAA 2233 Query 25929 GATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGAT 25988 || |||||||| || |||||||||||||||| | ||| || |||||||| ||||| || Sbjct 2234 GACTTCAAGCCCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGAC 2293 Query 25989 CCAGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNNNNNNNNNNNNNTGCCGGGG 26048 |||||| | | |||||||||||||||||| | |||| || Sbjct 2294 CCAGCGTTATACGGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGT 2353 Query 26049 GGCAAGTTCCGCGTATTGCACAAGTGCCAATTTCGCGGCATGGATTTCGAGGGGCAAGCC 26108 |||||||| ||||| |||||||| |||| ||||||||||| ||||| | || ||| Sbjct 2354 GGCAAGTTTCGCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCC 2413 Query 26109 GAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAATATATGTCGATCGATACGACG 26168 || || || | | ||||| ||| | | |||||| ||||| ||| ||||||| ||||| Sbjct 2414 GACGCAATCAGGCGCATCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACC 2473 Query 26169 GGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCTATCCGAGCGCGGTCGCGCTC 26228 ||||||||||||| ||| || |||||||| ||||||||||||| |||||||||||| Sbjct 2474 GGCATCGGCCAGGATGTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTT 2533 Query 26229 AACTATTCGCCCGAAATCAAGGGGCGTCTCGTGCTTAAGGGCTTGTCGGTGATCGGCAAG 26288 ||||| ||||| || |||| ||||| ||||| || || ||| ||||||||||||||||| Sbjct 2534 AACTACTCGCCAGAGGTCAAAGGGCGGCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAG 2593 Query 26289 GGCCGGCTCGAATTCGATGCCGGTTGGACAGACCTAGCGCAATCCTTCATGG 26340 ||||| ||||||||||||||||| ||||| || || |||||||||||||||| Sbjct 2594 GGCCGACTCGAATTCGATGCCGGATGGACGGATCTCGCGCAATCCTTCATGG 2645 Score = 553 bits (612), Expect = 3e-153 Identities = 541/699 (77%), Gaps = 9/699 (1%) Strand=Plus/Plus Query 26836 GTTCGGCAATGGGTACATCGAGCGGCGAAAGGCAAGGATCGGCAATACGCTCGCGCTCAA 26895 ||||||||| || |||||| ||| |||| || | ||| ||||||||||||||| Sbjct 3160 GTTCGGCAACGGCCCGATCGAGAGGCAAAAGAACCGGCTAGGCGGTACGCTCGCGCTCAA 3219 Query 26896 ACGCGCGCCGTCGAAATNNNNNNNNNNNNNNNCCGACTTGCAACGCTTCGTGCAGCTCAA 26955 || |||||| |||||| |||| |||| |||||| | ||| |||| Sbjct 3220 GCGGGCGCCGGCGAAATACATGCGCCGCGCGACCGATCTGCAGCGCTTCTTTCAGGTCAA 3279 Query 26956 CGGCTATCAACAGATCGAAT---ATGAGTTCGAGCCGGGTTCGGTGCATCACTTGATGGA 27012 |||| || |||| ||| |||||||||| ||||| | | | |||| ||||| Sbjct 3280 CGGC-AT--ACAG---GAAAGGCATGAGTTCGAACCGGGCGTGATCTTTAACTTAATGGA 3333 Query 27013 ACCCGACATTAATCAAGAGGTGTACGGCTTGCCCGAATATCTCGGCGCGCTGCACTCGGC 27072 |||||| || ||||| |||||||| ||| |||||||||||||||||||||||||| |||| Sbjct 3334 ACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCTCGGCGCGCTGCACGCGGC 3393 Query 27073 ATGGTTGAACGAGTCGGCGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGC 27132 |||||||||||||||||||||||| |||||||| || || ||||| | |||||||| Sbjct 3394 ATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTATGAGAACGACTCGCACGC 3453 Query 27133 CGGTTTCATCCTGTACATGACCGATGCGGCGCAAAGTCAAAGCGATGTCGACAAGATGCG 27192 ||| || |||||||||||||| || || ||||| | || || || ||| | |||| Sbjct 3454 CGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGGAAGACGTAGACGCGTTGCG 3513 Query 27193 CGAGGCGTTGAAGAACAGCAAGGGGCCGGGGAATTTCCGAAACCTTTTCATGTACGCGCC 27252 ||||||| |||| | |||||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 3514 CGAGGCGCTGAAAATTAGCAAGGGACCGGGCAACTTCCGCAACCTGTTCATGTACGCGCC 3573 Query 27253 GAACGGCAAGAAAGACGGCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGACGA 27312 |||||| || || || || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct 3574 GAACGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCGAGGTCACGGCGAAGGACGA 3633 Query 27313 GTTCTTCAACATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCGCC 27372 ||| || ||||||||||| || ||||| |||||| ||||||| || |||||| | ||||| Sbjct 3634 GTTTTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCGCCGCACATCGCGTACCGCC 3693 Query 27373 TCAGCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTCGGCGCAACGGACAAGGCCGC 27432 || || || || | |||||||||||||| ||||| || || || | |||| ||| || Sbjct 3694 GCAACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTGGGGCCGCAGACACGGCGGC 3753 Query 27433 CGAGGTGTTCGGCGTGAATGAAATCGCGCCCCTGCAACGGCGCTTTGAACAGCTCAACGA 27492 |||||| ||||| | ||| ||||||| || || || | |||||| |||||| | || Sbjct 3754 CGAGGTATTCGGTGCGAACGAAATCGAACCGCTACAGAGTCGCTTTACGCAGCTCGATGA 3813 Query 27493 GTGGATCGGCGACGAGGTTGTGCGCTTCACGCCGTACAG 27531 |||||||||||||||||| ||||| |||| || ||||| Sbjct 3814 GTGGATCGGCGACGAGGTCGTGCGGTTCAATCCTTACAG 3852 Score = 113 bits (124), Expect = 9e-21 Identities = 211/308 (69%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 7102 GCCCTTGCGAAAGTGCGAGCGGTGTCGGTCGCTTGTCGGGTCGTCGCGCGTCTCTAGGTC 7161 || ||||||||| || |||||||| |||| | ||||| |||||||| || | || Sbjct 1401 GCTCTTGCGAAAATGAGAGCGGTGCTTGTCGGTGGTCGGATCGTCGCGGACTTCCATTTC 1460 Query 7162 GAGGTCGCACGTATAGCCGGCGTCGCTCATTTCATGCCGCACCTTCTTCACGAGCCACGA 7221 || | || ||| || |||| | ||| |||||||||||||||||| Sbjct 1461 CAGAGAGGTTGTCAGGCCCGCTTCGCCGAGCGTGTGCGTTGCCTTCTTCACGAGCCACGG 1520 Query 7222 TTCGGCGTCGATATCCGGTTTCCAGCCGTTGAGATAAACGGGCACTTCCGGGTAAATATC 7281 | ||| ||| |||||||| ||||| || || || |||| |||||| | | || Sbjct 1521 TGTTTCGTTGATTTCCGGTTTTAAGCCGGCGACATTTACCGGCAGCTCCGGGAATACCTC 1580 Query 7282 GGGCCGGCCGAGCGCCAGCGT--GAGCGACATAGTTGCCTGACTGCGTTGCGTGCGGTTC 7339 || ||||||||||| |||| | || | || ||||| ||||| |||||||| Sbjct 1581 AGGGCGGCCGAGCGC--GCGTTGGTAAGAAAATGTCGCCTGGCTGCGCTGCGTGCGTGCG 1638 Query 7340 AGCTCGGCCGTTGCCGCCGCGCGTGCCTCGGCTTCGGTCGGGTAGGTCTCCGGCAATACC 7399 | | |||| || ||||||||||| ||| ||||||||| ||| |||||||| || Sbjct 1639 AACGCGGCTCGAGCTGCCGCGCGTGCTTCGTCTTCGGTCGCATAGTCTTCCGGCAAAACT 1698 Query 7400 TTCATGTT 7407 || | ||| Sbjct 1699 TTAACGTT 1706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103193850016660