Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14784 109 1e-18 seq2137 107 4e-18 seq25256 100 6e-16 seq9362 84.2 5e-11 >seq14784 Length=15745 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| | |||||||| || || ||||| || | ||||| |||||||| ||||| Sbjct 8642 GTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATCTTCCAGCTG 8701 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || |||||||| || ||||| ||||||||||| || || Sbjct 8702 CTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTT 8761 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| ||||| |||||||| ||| || || || ||||| | ||||| | Sbjct 8762 GGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTCTTACT 8818 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| Sbjct 8819 GGTCAAGGTCTTCACAAAGATCTGCAT 8845 >seq2137 Length=523945 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || || || ||||| || | ||||| | |||||||| |||||||| || Sbjct 114435 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTCCCG 114494 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | | || |||||||| || ||||| || |||||||| || || |||| Sbjct 114495 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 114554 Query 195064 ACGTTCTCAATGGTGTC 195080 |||||||| |||||||| Sbjct 114555 ACGTTCTCGATGGTGTC 114571 Score = 107 bits (118), Expect = 4e-18 Identities = 120/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| |||||||| || || ||||| | | || |||||||| || ||||| ||||| Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTA 195102 ||||| || || |||||| ||||| |||||||| ||| ||||| || ||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTG 115969 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || ||||| ||||||||||| | |||||| Sbjct 115970 ATGGTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 >seq25256 Length=205224 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | ||||| | ||||| || Sbjct 45225 ACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCC 45166 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| | || ||||| ||||| ||||||||||| || || Sbjct 45165 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGG 45106 Query 195052 ATTTT 195056 || || Sbjct 45105 ATCTT 45101 >seq9362 Length=45889 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| | ||||| ||| | || | ||| | Sbjct 23844 AGTCTCAACACAAGATGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACAT 23785 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| ||||||| | | ||||| |||| ||| || | |||| ||| ||||| Sbjct 23784 CCATCTTGCAGCTGCTGGACAGGAAAGATTAGTCTTTGCTGATTAGGAGAAATTCCTTCC 23725 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| || || || || || || || ||| | |||| ||| Sbjct 23724 TTATGCTGGATCTTGGCCTTTACATTTTCTATTGTATCTAAAGGTTCAATCTCAAAAGTA 23665 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| ||||| Sbjct 23664 ATGGTCTTCCCTGT 23651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108334857153890