Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1865 120 3e-22 seq1414 120 3e-22 seq56286 116 4e-21 >seq1865 Length=140298 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | ||||||||| ||||||| ||| | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 110711 CTACCACACGTTCTCC 110696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAAT--TCATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || | | ||| |||||||| Sbjct 112287 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGGCTCGACATCACTCCCATC 112230 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 112229 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTC 112170 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||| ||||||| ||| Sbjct 112169 TCCATAAAGTCAAACGGATTTTCTAC 112144 >seq1414 Length=619926 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGCC 513362 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 513361 ACCACTCTTTCCCC 513348 >seq56286 Length=35121 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 10522 TGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATAGAC 10581 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 10582 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 10641 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 10642 TTTCTTATACCATA 10655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561541983538800