Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6471 132 4e-25 seq44690 122 7e-22 seq6800 102 7e-16 seq25256 86.0 5e-11 seq3359 86.0 5e-11 >seq6471 Length=258160 Score = 132 bits (146), Expect = 4e-25 Identities = 373/562 (66%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 549982 AAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCA 550041 ||| ||| | |||||||| || || | || ||||| || || || || || | || Sbjct 12338 AAAGAAA-TGGCTATAGGCATCGACATGGGTACCACCTACTCATGCGTGGGGGTGTTCCA 12396 Query 550042 AAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGT 550101 ||| || || || || || ||||||||||| || || ||| | || || || || || Sbjct 12397 AAACGGCAAGGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGT 12456 Query 550102 TTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGG 550158 ||||| || || || | | || | || || || | || ||||| || Sbjct 12457 GGTGTTCACCGACACCGAGTGGCTTATCGGGAAAGCGGCCAAGAACCAGGTAGCCA-TG- 12514 Query 550159 TAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTC 550218 ||||| || ||| |||||||| |||||| | || || || | ||||||||| | Sbjct 12515 -AATCCCCAGAACACTGCCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCC 12573 Query 550219 GACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC 550278 ||||| |||||||||| | ||||||||| ||||| | | || || || || Sbjct 12574 TGTAGTTCAATCAGATATGAAACTTTGGCCTTTTCAAATAATCAGTGAAGGAGGCAAGCC 12633 Query 550279 TTA--TATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCA 550336 | || || | | || || |||| ||| || | || || |||| || Sbjct 12634 CAAGGTACTGGTG-TCCT-ATAAAGGGAAGAAAAAAGCTTTCTATCCTGAGGAAATCTCT 12691 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-AC 550395 || ||||| | | |||||||| | || || |||||| |||||| | | || Sbjct 12692 TCCATGGTACTGACTAAAATGAAGGAGACTGCTGAGGCTTTT-TTGGTCCACCCTATCAC 12750 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||| || || ||||| ||||| ||||| | ||||||||||| || || ||||| || Sbjct 12751 CAATGCTGTGATCACTGTGCCAGCCTATTTCAGTGACTCACAACTACAGGCAACTAAGGA 12810 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||||| || || ||||| || | |||||||||||||| || |||||||| Sbjct 12811 TGCAGGCATGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGC 12870 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 12871 CATTGCCTATGGCTTAGATAAA 12892 >seq44690 Length=446859 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | |||||||| || ||||| |||||||| || ||||| || || Sbjct 423324 GTTACCAATGCTGTTGTCACTGTACCTGCTTATTTCAATGACTCTCAGCGTCAGGCAACC 423383 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| || | || |||||||| || |||||| Sbjct 423384 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTCAGGATCATCAATGAGCCAACTGCT 423443 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 423444 GCTGCTATTGCTTATGG 423460 Score = 113 bits (124), Expect = 4e-19 Identities = 236/348 (68%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | |||||||| | |||||||| || | || ||||| | || || || |||| Sbjct 423777 GCTGTCCGTCGTCTCCGCACTGCTTGTGAGCGGGCTAAACGCACGCTCTCTTCCAGTACC 423836 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| |||||| | || ||| | | ||| |||||||||| |||| | ||| | Sbjct 423837 CAGGCCAGTATTGAGATTGACTCACTCTATGAAGGAATTGATTTCTATACCTCCATTACC 423896 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | |||| |||||||| | | |||| || || | || | || || || || Sbjct 423897 CGTGCCAGGTTTGAAGAACTCAATGCTGACCTATTCCGTGGCACTCTGGATCCCGTGGAG 423956 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 ||| | | ||| | ||| | || |||||| | | ||||| ||||| || || ||| Sbjct 423957 AAAGCCCTGCGGGATGCTAAGCTAGACAAATCCCAGATCCATGATATTGTCCTAGTAGGT 424016 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAA 552192 || ||||| |||| || || |||| |||| | | || ||| || |||||| ||| Sbjct 424017 GGTTCTACCCGAATCCCCAAGATTCA-GAAACTTCTGCAGGACTTCTT-CAATGGAAAAG 424074 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCG 552240 | | ||| | || | || || |||||||||||||| |||||||||| Sbjct 424075 AGCTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCCG 424122 >seq6800 Length=71777 Score = 102 bits (112), Expect = 7e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 || ||||| |||||||| | ||||||||||| ||||| ||||| | ||||| || || Sbjct 54231 GAGGTTACCCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCA 54290 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 || |||||||||||| |||||||||| | |||||| | | || |||||||| || Sbjct 54291 ACCAAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATAATCAATGAGCC 54346 >seq25256 Length=205224 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| || || || ||||| ||| | | ||| || |||||||||| ||| Sbjct 45238 CCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGG--ATGTTGTAATCAGAGAGA 45181 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || || || || || ||||| ||||| || ||||| || ||||| || Sbjct 45180 GTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATG 45121 Query 563371 CCTTCTTTATCTTGAATTTT 563390 ||||||||||| || || || Sbjct 45120 CCTTCTTTATCCTGGATCTT 45101 >seq3359 Length=99056 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| |||| | ||| | | |||||| || ||||| || ||||| || ||||| Sbjct 65229 AATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCT 65170 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||||||||||||||||||| Sbjct 65169 TTGCTGATCAGGAGGAATTCCT 65148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025029806578300