Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq675 127 3e-24 seq18439 100 4e-16 seq11898 86.0 8e-12 >seq675 Length=714446 Score = 127 bits (140), Expect = 3e-24 Identities = 181/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | ||| | || ||| ||| ||| | ||||| | | ||| ||||| Sbjct 180532 ACTGAGGAACTTACAGATTGCCAGTCATCCTCAGTTGTATGAGAATGGAACCTGTGAGAT 180591 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 | | |||||||| | ||| ||| |||| |||||||| |||| | | ||| |||||| Sbjct 180592 CTACCTGACCTGCTATGTGGAGAATCCAAATGACAATGTCTCACTGAGGTGGCAGGCCTC 180651 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || ||| | | || | |||||||| | |||| |||||| | ||| ||| Sbjct 180652 AGGAAACACACTTTCAAGTGAAGCGAACCTCACTATCTCCAGGGACCTTAAGAATTTCAG 180711 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||||||||||| ||||| || || || |||| ||| || | || | | | ||||| Sbjct 180712 TGAACAGAACTACACCTGCATAGCTGAGAATCCTGTCAGCCATTTATCCTCCTCTGTCTC 180771 Query 2447 GGCCCAGAAGCTGTG 2461 |||| || ||||| Sbjct 180772 TGCCCGGAGTCTGTG 180786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1884 CAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCC 1943 ||||||||||| ||||||||||| ||| ||||| || |||||| ||||||| || ||| Sbjct 175953 CAAACCAGCTCAACCCCGCTGATGGTGGCCGGGGTTCTGGGGGAGGCCGTAACTCTTCCC 176012 Query 1944 CTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCTCC 2003 ||| | || | || || | ||| ||| ||||||||||| |||| || || || Sbjct 176013 CTGCAGCTTTCTGCAGGACGGGAGACTGAGTACATCACCTGGCTTCACAATGGAACATCG 176072 Query 2004 ATCGCCTTTAT 2014 |||| ||| || Sbjct 176073 ATCGTCTTCAT 176083 >seq18439 Length=153645 Score = 100 bits (110), Expect = 4e-16 Identities = 129/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 |||||||||| | || |||||| | |||||| ||| ||||||||| ||||| || Sbjct 40150 AATCTAACCTGCGTCACCAATGACTCTGGAATCTCCATCCGGTGGTTCTTCAATAACCAG 40091 Query 177723 AATATATCATCATCACAGAAA--ATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAG 177780 | | | || | ||||||||| || |||||| || |||| ||| ||||||| |||| Sbjct 40090 AGTCTG-CAGC-TCACAGAAAGGATGAAGCTGTTCCAGGACAATAGGACCCTCACCATAG 40033 Query 177781 ACCCGGTC--GAGAGAGGATT-TGGGACGACATCACTGTGAGGTCTCCAAC 177828 |||| ||| ||| |||||| ||||| |||||||||||||||||||| Sbjct 40032 ACCCTGTCAGGAGGGAGGATGCTGGGAATT-ATCACTGTGAGGTCTCCAAC 39983 >seq11898 Length=103876 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 186279 AATTTTCTTAAAAGATATAAAGGCCCATCGGAACACTGGGTCGGTCTTCGAAGACAATCC 186338 |||||||| |||||||| |||||||| || || |||||| | || || ||||| ||||| Sbjct 25100 AATTTTCTGAAAAGATACAAAGGCCCTTCTGACCACTGGATAGGCCTCAGAAGAGAATCC 25159 Query 186339 TCTAACCACACTTGGAAATGGATAGACGAGACGGA 186373 || | |||| ||||||||||| |||| | || || Sbjct 25160 TCACATCACATTTGGAAATGGACAGACAACACTGA 25194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628648646553200