Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4223 188 8e-43 seq1414 111 2e-19 seq1865 102 1e-16 >seq4223 Length=550205 Score = 188 bits (208), Expect = 8e-43 Identities = 327/473 (69%), Gaps = 7/473 (1%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| ||||||||| |||||| || || | |||||| Sbjct 266666 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATT 266607 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || |||| | ||| ||| || | ||| ||||| ||||||||| Sbjct 266606 GGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGA 266547 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||| | | ||||| || | ||||| ||||| | |||| || | || | Sbjct 266546 ACCAGAAGA-----TTCCTTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGC 266492 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | |||||||||||| || ||||| || | Sbjct 266491 CTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCAT 266432 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||||| || || |||||||| || |||||| || | || ||||| ||||| || Sbjct 266431 CTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAG 266372 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||||||||| | || ||||| || || || || || |||| ||||| | Sbjct 266371 GAGACTATACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCG 266312 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | |||| ||||| || | ||||| || | ||||||||||| ||||| | Sbjct 266311 GGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGC 266253 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||| | |||||||||||| ||||||| |||||||| || || ||| Sbjct 266252 CATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATACCTCTCCTCA 266200 >seq1414 Length=619926 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 513483 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 513424 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 513423 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACG 513364 Query 37318 CTAC 37321 | || Sbjct 513363 CCAC 513360 >seq1865 Length=140298 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 110710 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 110709 ACCACACGT 110701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591719522546800