Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5645 138 9e-28 >seq5645 Length=125407 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 12048 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 11989 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||||||||| ||||||||||| ||||| || || ||||| || | | Sbjct 11988 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 11929 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || |||||||| Sbjct 11928 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAG 11885 Score = 86.0 bits (94), Expect = 5e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || || ||||||||||| || || || || || || | || || |||| Sbjct 9369 TGTATTCTGCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9310 Query 30218 CCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 | || ||| ||| ||| ||||||| ||||||| ||| || ||||| ||||||||| Sbjct 9309 CTCTTGTGGA-GAACCCCAGGCTGTCCAAGAAGTCTCGGGATCCATTGGCATCCCAGATC 9251 Query 30277 TTTACCCCCTT 30287 || || ||||| Sbjct 9250 TTCACTCCCTT 9240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408215861221910