Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq61401 250 5e-62 >seq61401 Length=4951 Score = 250 bits (276), Expect = 5e-62 Identities = 308/421 (73%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 11871 CCCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTG 11930 |||||||||| || ||| ||||||| | || || | |||||||| ||||| |||| Sbjct 3737 CCCCAAACCCGCCTGTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTG 3678 Query 11931 CTGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAA 11990 | || | || ||| || || |||||||||||||||| |||||||| ||||| || | | Sbjct 3677 CGGCGAGCAGGTCGTCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGA 3618 Query 11991 CCTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACA 12050 |||| || | || || | || || || |||||||||||||| |||| |||||| |||| Sbjct 3617 CCTCGGACACCGGGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACA 3558 Query 12051 GGTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGT 12110 ||||||||||||||||||| || ||| |||||| |||| ||| | || |||| Sbjct 3557 GGTTGCGGAAGTTGCCCGGTCCCTTGCTAATTTTCAGCGCCTCGCGCAACGCGTCTACGT 3498 Query 12111 CCTCCTGGTTCTGCGCGGCGTCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTTAA 12170 | ||||| |||||||| ||||| |||||||||| ||| ||||| ||||| |||| Sbjct 3497 CTTCCTGTTTCTGCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCT 3438 Query 12171 TGTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGCTG 12230 ||||| || || ||||| || || ||||| |||| | || | | | || Sbjct 3437 CATAGTAGCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGC 3378 Query 12231 ACAGATATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTCCATCAGGTGAAAGA 12290 |||||||| ||||| || || | |||||| || | ||| || ||||| | || ||||| Sbjct 3377 CGAGATATTCGGGCAGGCCATACACCTCCTGATTGATATCGGGTTCCATTAAGTTAAAGA 3318 Query 12291 T 12291 | Sbjct 3317 T 3317 Score = 197 bits (218), Expect = 3e-46 Identities = 444/667 (67%), Gaps = 9/667 (1%) Strand=Plus/Minus Query 13099 TAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGCTGC 13158 || ||| | || |||| |||||||| |||||| | || || ||||||| | | ||| Sbjct 2493 TAGACATCCTGGCCGATGCCGGTCGTGTCGATCGCCATGTATTCCACGTTGAAATCCTGT 2434 Query 13159 GTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCCATCCCGCGCCACTGATGACGC 13218 || | |||| || || |||||||| |||||||| |||||||| || | Sbjct 2433 GTGATGCGCCTGATTGCGTCGGCCTGGGCTTCGAAGTCCATGCCGCGCCATTGCTCCTTG 2374 Query 13219 TCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGTGCCATAACCACGCAGCCTGCG 13278 | ||| | || ||||| || || || || | || || |||| || | ||| || Sbjct 2373 TGCAGCACGCGAAACTTGCCACCGGGCACCGCCGGGGGCGCCACCACAATCAGGCCGGCC 2314 Query 13279 CTGTCACCGTTCTGCGTACCTTTTGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCA 13338 ||| |||| || | || |||||||| || | ||| || || | | Sbjct 2313 GAGTCGCCGTA-----TAAC----GCTGGGTCATAGCCCACCCATACAGGTCGGTATGCG 2263 Query 13339 AACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAGACTTCCCAGCTGTCCACCATGCAC 13398 || ||||| ||||||| | || || || || | ||||| ||||||||||| Sbjct 2262 AAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGTAGCTCCCACGAATCCACCATGCAG 2203 Query 13399 GCCTGCAGCTCGCTGAGCGGGAACACGGACGCGAGATCGTCCACGAACTCACACATCAGC 13458 ||||| ||| ||||||||| | || || ||||| | ||| | |||||||| | Sbjct 2202 CGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCGTCAATGAAGTGACACATCAAC 2143 Query 13459 AGGTTCTGGTATTCGTCCGGGCTGTACTCCATGCGCAGCTGGTCGAGGTCGAACAGGTTA 13518 |||||| | ||||| || ||||||||||| | | ||||| | | || ||||||||||| Sbjct 2142 AGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGCTCGGCAAGATCGAACAGGTTG 2083 Query 13519 CAGCCGCCGCGCACCGCATCCTCCACGGTGACGATCTGGCGGTACTGCCCGTCAGGGCAG 13578 || ||||| ||||| || || || || ||||||||||| |||||| || ||| Sbjct 2082 CAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGGCGCCACTGCCGATCCTCGCAA 2023 Query 13579 AGCAGGCCGCGCGCAAGGTTGCTGTGGGTCAGGTTAATATCCACCTTGTCCGCTTTGGCA 13638 ||| ||||||| || || |||| | | || | | || | || | || || Sbjct 2022 AGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCAGGTGCAGATGATCGACCTTAGCG 1963 Query 13639 CGGCCCCGGTTAAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAG 13698 ||||| ||||| || | | |||| |||||| | ||| || || || ||| || Sbjct 1962 CGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAATACGCCTCATGCTGCATGCTCGAT 1903 Query 13699 GGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATGGCCATACCGGAAGCCACTTTG 13758 |||||||| |||||||||| || ||| || | || || ||||| || || || || ||| Sbjct 1902 GGCGTGGAGAAATAGGTTTTTCTCCACTTGCTATGCATCGCCATGCCCGATGCAACCTTG 1843 Query 13759 CGCAGTT 13765 ||||| Sbjct 1842 TTCAGTT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108948332188660