Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7700 178 2e-39 seq14075 149 1e-30 seq4223 100 5e-16 seq35028 93.3 8e-14 seq56286 86.0 1e-11 >seq7700 Length=670131 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| |||||| || ||||||||||| Sbjct 569165 AGCAGCTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGTTTTAGCTGGGCCACCTGC 569224 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || | ||||| || ||||| |||| |||||| |||||| Sbjct 569225 TCCCGGAGGAGCCCGGCAGTGCTCGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACC 569284 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||||||||| || ||| ||||| |||||||| |||| Sbjct 569285 TTGTCCTCCAGGCGCGCGATGCGTTCCAGCTTCCGCTTCCGGCACTTGGTGGCAGCCAGC 569344 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| || Sbjct 569345 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGGGG 569404 Query 241625 GAC 241627 ||| Sbjct 569405 GAC 569407 >seq14075 Length=561159 Score = 149 bits (164), Expect = 1e-30 Identities = 163/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | |||||| | ||| Sbjct 21905 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGTAGGCTCGCGGTGGACGCCAG- 21963 Query 241475 CCTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | ||| |||| ||||||||||||||| || |||| |||||| |||| Sbjct 21964 -CTCCGTGTTCTGGCTTTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 22022 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | |||||| |||||| |||| ||| || | |||||| || || | ||| |||||||||| Sbjct 22023 GCTTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGTTCCGCCT 22082 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || ||||| ||||||||||| || ||| Sbjct 22083 TAATACGCTCCTGTGTGTCCATGTCGATGGGCGAC 22117 >seq4223 Length=550205 Score = 100 bits (110), Expect = 5e-16 Identities = 307/473 (65%), Gaps = 14/473 (3%) Strand=Plus/Minus Query 48098 GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 ||||||| ||||||| ||| | | || |||||||||||| | ||| || ||| Sbjct 266683 GGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCACAGTGTAAACCTATA 266627 Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217 || | ||| || || | ||||| || ||||||||||| || || | |||||| Sbjct 266626 TCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTGAGC 266567 Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTG 48277 ||||| || || ||||| ||||| |||| || ||||| | || || || Sbjct 266566 CAGAATATCAATGCAAAAGAACCAGA-----AGATTCCTTCCACGGTAGCAAAGGCTACC 266512 Query 48278 AGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTC 48337 | | ||||| | | ||| | |||||| ||||| | | ||||| ||||||||| Sbjct 266511 ACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTC 266452 Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCC 48397 ||||| | || |||||| |||| ||||| |||||| || | || | |||| Sbjct 266451 TTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGAGTCC 266392 Query 48398 GCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 || || || | |||| || | ||||| ||||| | | || || || || Sbjct 266391 TTAATGTAAGTGTCAATGAGGAGACT---ATACATTTCAGAACGTATGTTTTCCATGGCA 266335 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 || ||||| | ||||| | ||| || | ||| |||||| | || | |||| Sbjct 266334 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCC 266275 Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567 | || || ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 266274 ACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATG 266222 >seq35028 Length=303248 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 210432 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTTCTTTTCCGGCACTTGGAGGCA 210373 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | |||||||| || || |||||| |||||||||| Sbjct 210372 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTAATCCGCTCCTGGGACTCCATGTCG 210313 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 210312 ATGGGAGAC 210304 >seq56286 Length=35121 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 17700 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 17759 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||| |||||||| |||| || |||||| ||| Sbjct 17760 -TTGCTCTTCCGATTACAGGAATCTTTGTAAAGCATGTACGGGGTACCTGTCTCTGTCTG 17818 Query 213647 GGAC 213650 ||| Sbjct 17819 AGAC 17822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930593465612800