Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4223 102 2e-16 seq1865 86.0 1e-11 >seq4223 Length=550205 Score = 102 bits (112), Expect = 2e-16 Identities = 309/471 (66%), Gaps = 20/471 (4%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| ||||||||| | |||||| ||||| || || || || ||| | || | | Sbjct 266229 TGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCC 266288 Query 25661 GGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 ||||| ||| ||| || ||| |||||||| | ||||| || ||||| ||||| Sbjct 266289 AAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGACTTCCAAATTGCCATGGAAAA 266346 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGA 25775 | | ||||| ||||| | || || || || ||||||| ||| | || Sbjct 266347 CATACGTTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAGGACTCCAAAGA 266403 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || | || || |||||| ||| || || | | |||| |||||| || Sbjct 266404 AAGTAAATTTCTCTTCAATGCCATTGAGATGATGCCTTGTGTAAAGAAGAAGGCAGATTG 266463 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| || ||||| || || || | |||| | ||| || || |||||||||||| Sbjct 266464 GGCTTTGCCTTGGATTGG-AGACAAAGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTTG 266522 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 || | ||||| || ||||| | ||||| ||||| || |||||||||||| | Sbjct 266523 CTACCGTGGAAGGAATCTTCT-----GGTTCTTTTGCATTGATATTCTGGCTCAAGAAAC 266577 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 | || | |||| || || |||||||| || || || ||||| || ||| | | Sbjct 266578 AAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGAGATATAGGTTTAC 266637 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 || | || |||||||||||| | | || ||| |||| |||||||||| Sbjct 266638 ACTGTGACTTTGCCTGCCTGATGTTCA---AACACCTGCTACACAAACCTT 266685 >seq1865 Length=140298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 || ||||| ||||||||||| || || || ||||||||||||| ||||||||||| ||| Sbjct 112150 AATCCGTTTGACTTTATGGAGAATATCTCACTGGAAGGGAAGACTAACTTCTTTGAGAAG 112209 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 112210 AGAGTAGGCGAGTATCA 112226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927908176124800