Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq61401 230 4e-56 >seq61401 Length=4951 Score = 230 bits (254), Expect = 4e-56 Identities = 304/419 (73%), Gaps = 2/419 (0%) Strand=Plus/Plus Query 12722 TCTTCCACCTCATTGAGCCGGATATTAACCAGGAGCTGTACGGCCTGCCGGAATATCTCA 12781 |||| || | || || || ||||| || |||||| |||| |||||||| ||||||||| Sbjct 3318 TCTTTAACTTAATGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCTCG 3377 Query 12782 GCGCGTTAAACTCTGCCTGGCTGAATGAAGCGGCCACGCTGTTTCGCCGCAAGTATTATC 12841 ||||| | || | || ||| |||| || |||| ||||||||||| || || ||| Sbjct 3378 GCGCGCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTATG 3437 Query 12842 AGAACGGCGCACACGCAGGCTACATCCTGTATATGACCGACGCGGCGCAG-AGCAGCAGC 12900 |||||| | | ||||| |||| |||||||| ||||| ||||| |||||| | ||| | Sbjct 3438 AGAACGACTCGCACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGGA-A 3496 Query 12901 GATATCGACCGGATGCGCCAGGCGATGCGCGACACGAAAGGCCTGGGTAACTTCCGCAAT 12960 || | ||| | ||||| ||||| || | || || | ||| ||||||||||| Sbjct 3497 GACGTAGACGCGTTGCGCGAGGCGCTGAAAATTAGCAAGGGACCGGGCAACTTCCGCAAC 3556 Query 12961 CTGTTTATGTACGCGCCGAACGGCAAGCCGGACGGAATTAAGATCCTGCCGCTCAGCGAG 13020 ||||| ||||||||||||||||| || ||| |||||| || | | ||| | |||| Sbjct 3557 CTGTTCATGTACGCGCCGAACGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCGAG 3616 Query 13021 GTGGCGACGAAAGATGATTTCTTTAACATCAAAAAGGCCAGCCGTGACGACCTGCTGAGC 13080 || || |||| || || || ||||||||||| || | | || ||||||||||| | Sbjct 3617 GTCACGGCGAAGGACGAGTTTTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCGCC 3676 Query 13081 GCGCACCGCGTGCCGCCGCAAATGATGGGGATTATCCCGGACGGTGCAGGCGGCTTTGG 13139 || || ||||| ||||||||| | || || | | ||| | | ||||||| ||||| Sbjct 3677 GCACATCGCGTACCGCCGCAACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTGG 3735 Score = 219 bits (242), Expect = 8e-53 Identities = 456/669 (68%), Gaps = 9/669 (1%) Strand=Plus/Plus Query 11273 GGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTTCCACGCCGTCGAGCCTGTCG 11332 |||||| || |||||| |||||| | | ||||| || |||||||| |||||| || | Sbjct 1856 GGCATGGCGATGCATAGCAAGTGGAGAAAAACCTATTTCTCCACGCCATCGAGCATGCAG 1915 Query 11333 CACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACAAAGGGCGGCGCAGCAAAGCC 11392 || || ||| | |||||| | ||||| | |||||| || || ||| || | | Sbjct 1916 CATGAGGCGTATTCATTCTGGACCGGCGACCATTTCAACCGCGGCCG-CGCT--AAGGTC 1972 Query 11393 GATCGCATCGAAATCGACCTGTCGCATACGCACCTGGCAAAAGGCGCGCTGTGCGGTGAC 11452 |||| | | | ||| | | || | | || ||| ||| ||| |||| || Sbjct 1973 GATCATCTGCACCTGGACGTAGCACACAAGGCGCTCGCACGCGGCCGGCTTTGCGAGGAT 2032 Query 11453 GGCCAGTGGCGGCAGATTGTGACGGTTGAGGATGCGCTGACCGGCGGCTGTAACCTGTTT 11512 | |||||||| ||||| |||||||| || || ||| | | ||||| || |||||||| Sbjct 2033 CGGCAGTGGCGCCAGATCGTGACGGTCGAAGACGCGGTTGCAGGCGGTTGCAACCTGTTC 2092 Query 11513 GACCTCGACCAGCTCCAGCTGGAATACAGCCCGTCGGAATACCAGAACCTGCTGATGTGT 11572 || || | | |||| ||| || |||||||| |||||| | ||||||| |||||||| Sbjct 2093 GATCTTGCCGAGCTGGGGCTCGAGTACAGCCCCGAGGAATATCTGAACCTGTTGATGTGT 2152 Query 11573 GAGTTTGTGGACGATGAGGCGAGCG-TGTTCCCGTTCGCCGAGCTGCAGACCTGCATGAT 11631 | || | ||||| ||| | || | |||||| ||||||| ||||| ||||||| | Sbjct 2153 CACTTCATTGACGACACGGC-ATCGATTTTCCCGCTCGCCGACTTGCAGCGCTGCATGGT 2211 Query 11632 CGACAGCCTGGAGGAATGGAGCGACTTTAA-CCCGTACCTGCCGCGCCCGTTTGATTACC 11690 || |||| | || ||||| || ||| | | ||| ||||| || | |||| Sbjct 2212 GGATTCGTGGGAGCTACGGGAAGACTTCAAGCCCCTGGC-GCCCCGCCCTTTCGCATACC 2270 Query 11691 GCCCGGTCTGGATTGGCTACGACCCGTCGCACACCGGCGACAGCGCAGGCTGTGCCGTTA 11750 | || || ||| | ||||| ||||| || ||||||| || ||| || Sbjct 2271 GACCTGTATGGGTGGGCTATGACCCAGCGTTATACGGCGACTCGGCCGGCCTGATTGTGG 2330 Query 11751 TCGCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGCGTGCTGGAGCGTCACCAGTGGCGGG 11810 | ||||| ||| ||| | || |||||||||||||||||| | | || ||||| | Sbjct 2331 TGGCGCCCCCGGCGGTGCCCGGTGGCAAGTTTCGCGTGCTGCACAAGGAGCAATGGCGCG 2390 Query 11811 GCATGGACTTTGCCGCGCAGGCAAAATCCATTGAGGACTTAACGAAAAAATACACCGTCG 11870 |||||||||| | || ||||| | | || | | | || | | | || ||| | Sbjct 2391 GCATGGACTTCGAAGCCCAGGCCGACGCAATCAGGCGCATCACACAGGATTTCAACGTGG 2450 Query 11871 AGTATATCGGCG-TGGATGCGACCGGCATCGGCCAGGGCGTTTTCCAGCTGGTTCGCCAG 11929 | || || |||| | || |||||||||||||||||| || | |||||| ||||||||| Sbjct 2451 AATACAT-GGCGATCGACACGACCGGCATCGGCCAGGATGTCTACCAGCTCGTTCGCCAG 2509 Query 11930 TTCTACCCG 11938 ||||| ||| Sbjct 2510 TTCTATCCG 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94392689228040