Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq44690 116 2e-20 seq6800 93.3 3e-13 seq6471 87.8 1e-11 >seq44690 Length=446859 Score = 116 bits (128), Expect = 2e-20 Identities = 229/336 (68%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||||||||| || ||||| || | || ||||| ||| || | | | Sbjct 423786 CGTCTCCGCACTGCTTGTGAGCGGGCTAAACGCACGCTCTCTTCCAGTACCCAGGCCAGT 423845 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| || || | |||||||||||||| |||| ||||| | || | Sbjct 423846 ATTGAGATTGACTCACTCTATGAAGGAATTGATTTCTATACCTCCATTACCCGTGCCAGG 423905 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | |||| || || | || | || ||||| || ||| || Sbjct 423906 TTTGAAGAACTCAATGCTGACCTATTCCGTGGCACTCTGGATCCCGTGGAGAAAGCCCTG 423965 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| |||| || |||||||| || ||||||| ||||| || ||||| ||||| || Sbjct 423966 CGGGATGCTAAGCTAGACAAATCCCAGATCCATGATATTGTCCTAGTAGGTGGTTCTACC 424025 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 |||| || || || ||||| | || | | || ||||| ||| || | ||| | Sbjct 424026 CGAATCCCCAAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGAAAAGAGCTGAATAA 424084 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || |||||||| |||||||| ||||| || Sbjct 424085 GAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 424120 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || || || ||| |||||| | ||| | || | || ||||| | Sbjct 422374 TTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGG 422433 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||||||||||||||| || || || |||| || ||| ||||| | |||||||| | Sbjct 422434 AAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCCTTTACTGATA 422493 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 | |||| | || || |||||||| || | |||| |||| Sbjct 422494 CCGAACGATTGATCGGTGATGCTGCCAAGAACCAAGTTGCA 422534 >seq6800 Length=71777 Score = 93.3 bits (102), Expect = 3e-13 Identities = 207/307 (67%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || |||| ||||| ||| || || ||||||||| |||| || || Sbjct 56102 AGGTGAACGACCCCTCACGAAAGACAATCACCTTCTGGGAACTTTTGATCTGACGGGAAT 56161 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 |||||||||||| | || ||||| || |||||||| || ||||| || |||| ||||| Sbjct 56162 TCCTCCTGCTCCTCGTGGGGTTCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 56221 Query 476155 TATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTAC 476214 |||||| || || ||| || ||| || ||| | || || || || ||||| Sbjct 56222 CATTCTTCGCGTGACGGCTGAAGACAAAGGTACAGGCAACAAAAATAAGATCACCATTAC 56281 Query 476215 AAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGA 476274 || | | | | | || ||| ||||| || | |||||| |||| ||| | | Sbjct 56282 CAATGACCAAAATCGCCTAACACCTGAAGAAATTGAAAGGATGGTTAATGATGCCGAGAA 56341 Query 476275 GTTTGAAGAAGCTGATAACAAGAGAAA--AGCTGCTATTGATGCAAAGAATGAACTTGAA 476332 ||||| || | || || ||| || ||| || |||||| | | |||||| | ||| Sbjct 56342 GTTTGCCGAGGAAGACAAAAAGCTCAAGGAGC-GC-ATTGATACCAGAAATGAATTGGAA 56399 Query 476333 AATTATG 476339 | |||| Sbjct 56400 AGCTATG 56406 >seq6471 Length=258160 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| | ||| ||||||||||| ||||| || || ||||| |||||||| Sbjct 13722 GGGATCCCTCCTGCACGCAGGGGAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCC 13781 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||||||||| ||||| || || Sbjct 13782 AATGGTATTCTCAATGTAACAGC 13804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264718872289160