Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq12799 320 2e-82 seq257 178 1e-39 seq3917 93.3 5e-14 >seq12799 Length=317942 Score = 320 bits (354), Expect = 2e-82 Identities = 666/986 (68%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||| || ||||| || Sbjct 44080 CAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTGTGTCAAACTTATTGGC 44021 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | || || ||||||| || ||| || | || || | ||| || Sbjct 44020 AAACAAGTGGTGTG---TATGAAGAATCCAGTTCAAGTCACCTGCTCCAAAAATGCACAC 43964 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || ||| |||| || ||||| | || || || | | ||||||||| Sbjct 43963 AGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 43904 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||| || || ||||| |||||||| || |||| || || | Sbjct 43903 AAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCAGACATGTCATACTTAGA 43844 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || | || || | || | |||||||| || | || Sbjct 43843 GCTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATAGTGGCCCAGAGATACTC 43784 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| |||| ||| | || Sbjct 43783 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGATTTTTTTGTTCTTGAG 43724 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || || || ||||| || || ||||| || || | || | Sbjct 43723 CACATACCCTACATACTTCCTAGTGACTACAAAATAGGCACTGCCTGAAAAGAGAGGCGT 43664 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || |||||| || ||||| | || | ||| | ||| | | Sbjct 43663 TTCGAGAGGGGGTTGCATTTTGTCAGTCCCCGTGTTGGTCAGCTTTCCGTCCACAACTGT 43604 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 | |||| |||||||| | | || | | |||||| || || |||||| |||| Sbjct 43603 ATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGATTGTT 43544 Query 160592 --GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 ||| | | | || || |||| | |||| || || ||||| || || | ||||| Sbjct 43543 TTGGCCCATT--AATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 43486 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | || |||| ||||||||| | || |||| | |||||| | Sbjct 43485 TCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTATAGAGGTCCTGC 43426 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 || || || | || ||||| || || ||||| || |||||||| || |||| || | | Sbjct 43425 ATACAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCGTACACCACACTCTCCAGCTGA 43366 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC---CAGAAAGAAC 160826 ||||||||||||| |||| |||||| || | || || | ||| || || |||| | Sbjct 43365 CTGGCCACAAAGATGTTACTGAAACAGGATGCAATGCCAATCACTGCAGCCAAAAAGGA- 43307 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 ||| | | | ||| ||||||||| | |||||| | ||||||||| ||||||||| Sbjct 43306 ATCCTCT--GATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCC 43249 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || ||||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 43248 CTCAGGAGCCTGTCAAACATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 43189 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| |||| | | | || || ||| ||||||| ||| || Sbjct 43188 AACTCTGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGCCTCTTGATGAAAGAA 43129 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 43128 CTACAATCACTTGTCATGTTTATATA 43103 >seq257 Length=475938 Score = 178 bits (196), Expect = 1e-39 Identities = 223/305 (73%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || |||||||||||| || | ||||| || || || Sbjct 92610 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACAGCCCTCATCATC 92551 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| |||| |||| || || |||||||| Sbjct 92550 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCAC 92491 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || | ||| | ||| || | ||||| || ||||||| |||||||||| ||||||| Sbjct 92490 CTTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTT 92431 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 |||||||| ||| | || |||||||| || || ||||| || || | | || Sbjct 92430 TTCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTG 92371 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 ||| || |||| | ||| | || ||||||||||| || |||||||| || || | Sbjct 92370 CAGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCGCTTTTTCATCTTGGGTCACCA- 92312 Query 168470 CTGTC 168474 ||||| Sbjct 92311 CTGTC 92307 Score = 116 bits (128), Expect = 4e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | || || ||||| |||| ||||| |||| ||| |||||||| || Sbjct 95139 GTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCC---TTC 95083 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || | |||||||| || ||||| || || | | ||| || || ||||| || ||| Sbjct 95082 CCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGACGTAGTCCCGTTG 95023 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| | || ||| || |||||||||||||||| || | || |||||| | || Sbjct 95022 GGGTGTGAGACAATTTCAGTATTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGATC 94963 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||| || || || || | |||||||| |||||||||| Sbjct 94962 ACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTA 94923 >seq3917 Length=62630 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 46281 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 46222 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| ||||| ||||| |||| || || || || | ||| | ||||| | | || Sbjct 46221 GGAATATAGTTCTCATAGTTTTCCCTAGATGGCCCCAGAACGACAGGTACAGAGCCAGCC 46162 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAA 176407 | || | ||||| |||||||| ||||| || |||| ||||||||||| || Sbjct 46161 AGAAAAGCATTGTAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAGTTTTCGAA 46106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576637146589200