Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15362 86.0 1e-11 >seq15362 Length=836705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 || ||| | ||| | |||| | ||| ||||||| ||| ||| || || || || |||| Sbjct 451496 ACTACCACAAAGTCTGAATATAAGATGAAAAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 451554 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC--TCT--GTTGATCA 192423 | || || || |||| |||| | || ||||||||||| | || ||| || ||| Sbjct 451555 ACAAAGTATGTCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTCA 451614 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||| | || || || |||||||||| | | | ||| | | | Sbjct 451615 GGAGGAATTCCTTCCTTAACCTGAATCTTGGTTTTTACATTTTCTGTTGTATCCAAGGGT 451674 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | ||||| | ||| || || || | ||||| || || |||||||| || Sbjct 451675 TCAACCTTGAGAGTGACGGTCTT-CCGGTAAGGGTTTTCATGAAAATCTGCATCTT 451729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983462456854500