Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq61401 262 9e-66 >seq61401 Length=4951 Score = 262 bits (290), Expect = 9e-66 Identities = 410/580 (71%), Gaps = 21/580 (4%) Strand=Plus/Minus Query 9370 TGCAGCGGCACGATTTCGTTCCGCCCGAACACGCGCGCGGCGGTGTCGGCCGCGCCGAAC 9429 || ||||| ||||||||||| ||||| || || || ||||| || || || ||| Sbjct 3789 TGTAGCGGTTCGATTTCGTTCGCACCGAATACCTCGGCCGCCGTGTCTGCGGCCCCAAAC 3730 Query 9430 CCGCCCGTGTTGCTCGGGACGATGCCAAGCAACTGCGGCGGAACGCGATGGGCCGCGAGC 9489 ||||| || |||||||| || | ||| | | |||||||| |||||||| || |||||| Sbjct 3729 CCGCCTGTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGC 3670 Query 9490 GTGTCGTCGCGCGTCACGTTCTTGATGTCGAAAAACTGGTCTTTCGCTGCAACCTCCGAA 9549 |||||| ||||||||||||||||||| ||||||| ||| ||||| | ||||| || Sbjct 3669 AGGTCGTCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGAC 3610 Query 9550 ATCGGGATCAGTTGGACCGCGCCTTTTTTCGCCGCCGCTGTTTCGCGCGGCCGAGTGCAG 9609 | |||||| || || | | | ||||| | ||| ||||| | || Sbjct 3609 ACCGGGATTAGCTGAATTCCTTCCTTTTTACC-------GTTCGGCGCG------TACAT 3563 Query 9610 AAACAGGTTCCGGAAATTACCGATGCCCTT-CGAGTCGCGTAACGCCTTCCGGATCGCGT 9668 |||||||| ||||| || || ||||| | | | | ||||| || | ||||| Sbjct 3562 GAACAGGTTGCGGAAGTTGCCCGGTCCCTTGCTAATTTTC-AGCGCCTCGCGCAACGCGT 3504 Query 9669 CTACGTCGTCCGGGTCCATGTTCGG-GTCGTTGAGGTACAGGATGAACCCGGCGTGCGAG 9727 ||||||| ||| | | | || | | ||| | | ||||||||| || |||||||||||| Sbjct 3503 CTACGTCTTCCTGTTTC-TGCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAG 3445 Query 9728 CCGTTCGCGTAGTAGCGGCGCCGGAACAGGGTGGCGGACTCGTTCAACCACGCGGATTGC 9787 ||||| | |||||||| || || ||||| || || |||||||||||||| || | ||| Sbjct 3444 TCGTTCTCATAGTAGCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGC 3385 Query 9788 AACGATGCGATGTACTCGGGCATCCCGTACACCTCCTGATTCACGTCCGGTTCCATCAAC 9847 | || ||| || ||||||| || |||||||||||||| | || |||||||| || Sbjct 3384 AGCGCGCCGAGATATTCGGGCAGGCCATACACCTCCTGATTGATATCGGGTTCCATTAAG 3325 Query 9848 TGGAAGATCGAGCCCGTGTCGAACTGGTGGCGGTTGAGAAAGCCGTCGA--TGAACATGA 9905 | |||||| ||||| ||||||| || | | | | ||||| || ||| | || Sbjct 3324 TTAAAGATCACGCCCGGTTCGAACTCATGCCTTTCCTGTATGCCGTTGACCTGA--AAGA 3267 Query 9906 AATTGACCAGATCCGTTTTTCGGCGCGTGTATTTCGCCGG 9945 | |||||| || |||||| ||||||||||||| Sbjct 3266 AGCGCTGCAGATCGGTCGCGCGGCGCATGTATTTCGCCGG 3227 Score = 230 bits (254), Expect = 5e-56 Identities = 560/837 (67%), Gaps = 16/837 (2%) Strand=Plus/Minus Query 10497 CAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTTTTCCCGAT 10556 || ||| ||||||||||| || ||| || || |||||||| || || || ||||| Sbjct 2644 CATGAAGGATTGCGCGAGATCCGTCCATCCGGCATCGAATTCGAGTCGGCCCTTGCCGAT 2585 Query 10557 CACCGACATGCCTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGAGTAATTGATCGGTAC 10616 |||||||| |||||| || || || || ||| || || |||||||| || | || || Sbjct 2584 CACCGACAGGCCTTTGAGTACGAGCCGCCCTTTGACCTCTGGCGAGTAGTTAAGCGCGAC 2525 Query 10617 GACGCGCGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCCGGTCGTATC 10676 || ||| |||||||||| || ||||| | || | || |||||||||||||| || Sbjct 2524 CGCGTTCGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTC 2465 Query 10677 GATCGCGATATAGGTCACGTGGTAGCGCTGCGTCAATTCG-CGGATTTTCTCCGCCTGCG 10735 |||||| || || ||||| | | ||| || || || | |||| || ||||| | Sbjct 2464 GATCGCCATGTATTCCACGTTGAAATCCTGTGT-GATGCGCCTGATTGCGTCGGCCTGGG 2406 Query 10736 TTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTTCCGTTCGGCT 10795 ||||||||| ||||| ||| | | | | ||||| || || || || ||| Sbjct 2405 CTTCGAAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCA 2346 Query 10796 GCTCGGGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTA-AGGGCAGGGTCGTAG 10854 | | || || || | ||| | |||||||||||||| ||| | || ||||| ||| Sbjct 2345 CCGCCGGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC-GTATAACGCTGGGTCATAG 2287 Query 10855 CCGATCCATACCGGCTTCCAGCCGAACGGCCGATCGAGCAACGGCTTCACGTCCGTCCAC 10914 || | |||||| || | |||| || || || ||||| | ||| || Sbjct 2286 CCCACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGT 2227 Query 10915 ACGTCCCATGAATCGACCATGCACGCCTGTACGAGCCG--GAAGGCGAACACCGATGAGG 10972 | ||||| ||||| |||||||| ||| | || || || | ||| | ||||| | Sbjct 2226 AGCTCCCACGAATCCACCATGCAGCGCTG--CAAGTCGGCGAGCGGGAAAATCGATGCCG 2169 Query 10973 TGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGGCTGTTCGTTGAGC 11032 ||||||| | ||| || ||||| ||||||| | || ||||||||| | | |||| Sbjct 2168 TGTCGTCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTAC-TCGAGC 2110 Query 11033 GCAAG-TCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATGGCATCCTCGGCCGTG 11088 | || || | ||||| ||| | || | ||| ||| | || || ||| |||| Sbjct 2109 CCCAGCTCGGCAAGATCGAACAGGT---TGCAACCGCCTGCAACCGCGTCTTCGACCGTC 2053 Query 11089 ACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAGCGACGTATGGGAA 11148 |||||||| ||||| |||| || |||| | || |||||||| |||| | | || | Sbjct 2052 ACGATCTGGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCT 1993 Query 11149 ATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGTCCGCGCCAGTCCAA 11208 | ||| | | | | ||| | | | ||| |||||||||| | |||| ||||| Sbjct 1992 ACGTCCAGGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAG 1933 Query 11209 AACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCGCAAATGC 11268 || | ||| || || ||| | | | |||||||| ||||| | || | | | | | Sbjct 1932 AATGAATACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCACTTG 1873 Query 11269 GAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTTGCTGACCCAG 11325 |||| ||||||| ||| || ||||||||||||| | ||| || ||||||| Sbjct 1872 CTATGCATCGCCATGCCCGATGCAACCTTGTTCAGTTTGCGAAAACCGCCGACCCAG 1816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113145907239680