Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq61401 197 3e-46 >seq61401 Length=4951 Score = 197 bits (218), Expect = 3e-46 Identities = 471/701 (67%), Gaps = 17/701 (2%) Strand=Plus/Minus Query 1477 CGGGTAGAATGAGCGCACCAACTGGAATACGCCGAGACCGAGGCCGGTCGCGTCAATGCC 1536 ||| ||||| ||| || | |||| | || | | |||| |||||||| ||| || | Sbjct 2518 CGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGC 2459 Query 1537 GATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCTGCGCGGCAAA 1596 |||||||| |||||| | | || |||| | | ||| | || ||||| || | || Sbjct 2458 CATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGGGCTTCGAA 2399 Query 1597 GTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGG 1656 ||||||||| ||| || | | ||||| ||||||||||||||| | ||| |||| Sbjct 2398 GTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCCGG 2339 Query 1657 CGGCGCGAGTACGACACATCCGGCACTGTCGCCAGTGTGGGAC-GGGTCGTAGCCAATCC 1715 ||||| | || | ||||| |||||| || | | ||||| ||||| | || Sbjct 2338 GGGCGCCACCACAATCAGGCCGGCCGAGTCGCC-GTATAACGCTGGGTCATAGCCCACCC 2280 Query 1716 AGACCGGGCGCGAGCCGAACGGGTGGTCGGCGAACGGGGC--GAAGTCCTCCCATGTTTC 1773 | || || || | |||| ||| || |||| ||||| |||||| |||| | || Sbjct 2279 ATACAGGTCGGTATGCGAAAGGGCGG--GGCGCCAGGGGCTTGAAGTCTTCCCGTAGCTC 2222 Query 1774 CATCACG--TCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCG 1831 | |||| || |||||||||||||||| || ||| |||||| | ||||||| | ||| Sbjct 2221 C--CACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCG 2164 Query 1832 TCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGC 1891 || | || | ||||| ||||||||| | | ||||| |||| ||| | | ||| Sbjct 2163 TCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGC 2104 Query 1892 TGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGC 1951 | | | || ||||||||| |||| || || |||| ||||| || | || || ||||| Sbjct 2103 TCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGG 2044 Query 1952 CGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATT 2011 |||||||| | || ||||||| | || | |||||||| |||| | ||| | Sbjct 2043 CGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCA-- 1986 Query 2012 TCGATGC-GGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGG 2070 | ||| | | | | | | ||||| || |||||| | ||||| | |||||| | Sbjct 1985 --GGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGA 1928 Query 2071 ATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGC-GCAGATGCTTCT 2129 ||| || | ||| || | || || || || || || ||| | || ||| | | Sbjct 1927 ATACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCACTTGC-TAT 1869 Query 2130 GCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAA 2170 || |||||||||||||| || ||| ||| || ||||| Sbjct 1868 GCATCGCCATGCCCGATGCAACCTTGTTCAGTTTGCGAAAA 1828 Score = 150 bits (166), Expect = 3e-32 Identities = 355/521 (68%), Gaps = 14/521 (3%) Strand=Plus/Minus Query 162 TTGAACCTGATGACCTCCATGCCGAGCCAGTCGTTTACCTCCCTGAATCTGTCCTGTAGC 221 ||||||| | |||||| ||||| ||| || | | || | | || | ||||||| Sbjct 3843 TTGAACCGCACGACCTCGTCGCCGATCCACTCATCGAGCTGCGTAAAGCGACTCTGTAGC 3784 Query 222 GG--CGATAACTCGTTACGCACA-AAGACCTTTGCCACCTTCTCAACGTCACCCATTGAG 278 || |||| ||||| ||||| || |||| ||| || | || || | || | | Sbjct 3783 GGTTCGATT--TCGTT-CGCACCGAATACCTCGGCCGCCGTGTCTGCGGCCCCAAACCCG 3727 Query 279 CCAATATT-CTCAGGCTTGCCGCCCATGAGCTGGAACGGTACGCGGTGCGCATCCATCAG 337 || |||| ||| ||| |||| || || || ||||||||| || || | | ||| Sbjct 3726 CCTGTATTGCTC-GGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAG 3668 Query 338 GTCGGCGGCGC-TGGCTTTTTTGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCA 396 |||| | ||| | | || |||||||| ||||| || ||||| | | ||||||| || Sbjct 3667 GTCGTCT-CGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACA 3609 Query 397 ATGGCACGATTTTTATGCCGTCCGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAA 456 || | | | || || ||| ||| |||||||| | ||| | |||||||| | Sbjct 3608 CCGGGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGA 3549 Query 457 AGTTGCCGAG-CCCTTTAGAGTTACGCATTGCATCGCGCAGCGATTCGACGTCAGTCGCG 515 ||||||| | ||||| | || || || ||||||| || || ||||| || | Sbjct 3548 AGTTGCCCGGTCCCTTGCTAATTTT-CAGCGCCTCGCGCAACGCGTCTACGTCT-TCCTG 3491 Query 516 CTT-TGCGCCGGGTCAGTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATA 574 || ||||| | ||| |||| |||| ||| | || ||||||| | |||||| || || Sbjct 3490 TTTCTGCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTA 3431 Query 575 CTTGCGGCGGAACAGCGTCGCGGATTCATTCAGCCAGGCGGAATTAAGTGCGCTGAGATA 634 || || ||||||||||| || || |||| ||| || | | || |||| |||||| Sbjct 3430 GCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGATA 3371 Query 635 TTCAGGCAGGCCGTAAATCTCCTGATTAATATCAGGCTCCA 675 ||| |||||||| || | ||||||||| ||||| || |||| Sbjct 3370 TTCGGGCAGGCCATACACCTCCTGATTGATATCGGGTTCCA 3330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94961743576160