Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8117 149 8e-30 seq5732 149 8e-30 seq44719 143 3e-28 seq8470 140 4e-27 seq5202 134 2e-25 seq23939 125 9e-23 seq20604 125 9e-23 seq14185 104 3e-16 seq22695 96.9 4e-14 >seq8117 Length=206787 Score = 149 bits (164), Expect = 8e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 89421 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 89480 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 89481 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAAA 89540 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||| | Sbjct 89541 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGAT 89600 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||||||||| | | || |||||| Sbjct 89601 GGACCTGCTTGAGCACCTTGTACACGTACACCGAGTA 89637 Score = 132 bits (146), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413 || ||| ||| | |||||||||||| ||||||||||| | | | ||| || |||| Sbjct 890 TCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGATGGTCGAGCGC 831 Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| | |||||||| || ||||| ||||||| |||| ||||||||||| Sbjct 830 TTGTTGTAATGCGCCAGGCGCGACGCCTCACCCGCGATGCGCTCGAAGATGTCGTTGACG 771 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 || |||||||||| ||| | |||| |||||||| |||||| || ||||||||| Sbjct 770 AAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGATGGACCTGCTTG 711 Query 1254534 AGCACCTTGTAGATGAACGACGAGTA 1254559 ||||||||||| | | || |||||| Sbjct 710 AGCACCTTGTACACGTACACCGAGTA 685 Score = 109 bits (120), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1254357 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTG 1254416 ||| ||| | |||||||||||| ||||||||||| | | | ||| || ||||||| Sbjct 195883 CCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGATGGTCGAGCGCTTG 195824 Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476 || | |||||||| || |||||| | ||||| |||| |||||||||| ||| Sbjct 195823 TTGTAATGCGCCAGGCGCGACGCCTCGCCCGCCATGCGTTCGAAGATGTCGTTGATGAAC 195764 Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536 |||||||||| ||| | || |||||||| ||| ||||| |||||||| ||| Sbjct 195763 GAGTTCATGATGCCCATGGCTTTCGACGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGC 195704 Query 1254537 ACCTTGTAGA 1254546 || || |||| Sbjct 195703 ACTTTATAGA 195694 Score = 96.9 bits (106), Expect = 4e-14 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | | |||||||||| ||||||||||| | | | || Sbjct 4132 GCTTGGCCAGCTCCCCGGGCAGCAGCTGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 4191 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||| |||| || ||||| ||||||| |||| | Sbjct 4192 TGGTCGAGCGCTTGTTGTAATGCACCAGGCGCGACGCCTCACCCGCGATGCGCTCGAAGA 4251 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||| | Sbjct 4252 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGAT 4311 Query 1254523 G 1254523 | Sbjct 4312 G 4312 Score = 93.3 bits (102), Expect = 5e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| ||||| | | || Sbjct 120174 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGAATCTCCCTGGAAGTGA 120115 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| || | | Sbjct 120114 TGGTCGAGCGCTTGTTGTAATGTGCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAGA 120055 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 |||||||||| ||||||||||||| ||| | |||| |||||||| Sbjct 120054 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCC 120006 >seq5732 Length=77181 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 22111 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 22170 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 22171 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 22230 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 22231 TGTCTTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 22290 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||||||||| Sbjct 22291 GGACCTGCTTGAGCACCTTGTA 22312 Score = 98.7 bits (108), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||||||||| | | | || Sbjct 44574 GCTTGGCCAGCTCCCCTGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 44515 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 44514 TGGTCGAGCGCTTGTTATAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44455 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 ||||| |||| ||||||||||||| Sbjct 44454 TGTCGCTGACGAACGAGTTCATGA 44431 >seq44719 Length=22286 Score = 143 bits (158), Expect = 3e-28 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| ||| ||||||||| | ||||| Sbjct 19885 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAATGCGC 19826 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| |||||| ||||||| |||| ||||||||||| ||||||||||||| Sbjct 19825 CAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGAT 19766 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| |||||||| |||||||||||||||||| ||||||||||| Sbjct 19765 GCCCATGGCCTTAGACGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 19709 >seq8470 Length=30528 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 10030 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 9971 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 9970 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 9911 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | ||| |||||||| ||| |||| Sbjct 9910 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 9851 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||||||||| |||||||| Sbjct 9850 GGACCTGCTTGAGTACCTTGTA 9829 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 22847 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTAGAGGTGA 22788 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| |||| | Sbjct 22787 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 22728 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 22727 TGTCGTTGACGAACGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCGGTGTCGGGGT 22668 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||| || || Sbjct 22667 GGACCTGCTTGAGCACTTTATA 22646 >seq5202 Length=332107 Score = 134 bits (148), Expect = 2e-25 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || ||| || |||||||| ||| ||||| ||||| | | | || Sbjct 279908 GCTTGGCCAGTTCCCCCGGCAGGAGCAGGCGCAGGGCTGTCTGTATCTCCCTGGAGGTGA 279967 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 279968 TGGTCGAGCGCTTGT---AATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 280024 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 280025 TGTCCTTGACGAACGAGTTCATGATGCCCATGGCCTTAGGCGAGATGCCGGTGTCGGGGT 280084 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTAC 1254560 | |||||||||||||||||||| | || ||||||| Sbjct 280085 GGACCTGCTTGAGCACCTTGTACACATACACCGAGTAC 280122 Score = 100 bits (110), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| | |||||||| || |||||| ||||||| |||| |||||||| Sbjct 324793 GCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTT 324734 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||| ||||||||||||| ||| | ||| |||||||| ||| ||||| ||||| Sbjct 324733 GACGAACGAGTTCATGATGCCCATAGCCTTAGACGAGATGCCGGTGTCTGGGTGGACCTG 324674 Query 1254530 CTTGAGCACCTTGTA 1254544 |||||||||||| || Sbjct 324673 CTTGAGCACCTTATA 324659 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||| ||| |||| ||||||||||| ||||||||||||| ||| | |||| |||| Sbjct 255730 CGAAGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGA 255789 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| ||||||||| |||||||||||||||||| | | | || |||||| Sbjct 255790 TGCCCGTGTCGGGGTGGACCTGCTTGAGCACCTTGCATACGTACACCGAGTA 255841 >seq23939 Length=64380 Score = 125 bits (138), Expect = 9e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254371 GCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAG 1254430 ||||||||| ||||||||||| || | ||| ||| ||||||||| | |||||||| Sbjct 37058 GCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAATGCGCCAG 36999 Query 1254431 ACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGA 1254490 ||| |||||| |||| || |||| |||||||| || ||||||||||||| Sbjct 36998 GCGGGACGCCTCGCCCGCGATACGCTCGAAGATGTCGTTAACGAACGAGTTCATGATGCC 36939 Query 1254491 CATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| || ||||| |||||||||||||||||| ||||||||||| Sbjct 36938 CATGGCCTTAGACGAAATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 36885 >seq20604 Length=76445 Score = 125 bits (138), Expect = 9e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254371 GCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAG 1254430 ||||||||| ||||||||||| || | ||| ||| ||||||||| | |||||||| Sbjct 5449 GCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAATGCGCCAG 5390 Query 1254431 ACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGA 1254490 ||| |||||| |||| || |||| ||||||||||| ||||||||||| | Sbjct 5389 GCGGGACGCCTCGCCCGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTCATAATGCC 5330 Query 1254491 CATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | || |||||||| |||||||||||||||||| ||||||||||| Sbjct 5329 CATGGCTTTAGACGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 5276 >seq14185 Length=184186 Score = 104 bits (114), Expect = 3e-16 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | |||||||| |||||| ||| || ||||||| |||| |||||| Sbjct 83200 GCTGCAAACTACTTAGACATCAAAGGTCTGCTTGATGTTACGTGCAAGACTGTTGCCAAC 83259 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| || | || |||||||| ||||||||||| || ||||| Sbjct 83260 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAA 83309 >seq22695 Length=85541 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| | | | || Sbjct 52589 GCTTGGCCAGCTCCCCGGGCAGCAGTAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 52530 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||| | | | |||| || |||||| ||||||| |||| | Sbjct 52529 TGGTTGAGCGCTTGCTGTAAAGTGCCAAGCGCGATGCCTCGCCCGCGATGCGCTCGAAGA 52470 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || || ||||||| ||| | ||| ||||| || |||||||| Sbjct 52469 TGTCCGTTACTAAAGAATTCATGATACTCATGGCCTTTGAAGAGATTCCAGTGTCGGGGT 52410 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| ||||||||||||||| Sbjct 52409 GAACTTGCTTTAGCACCTTGTAGATG 52384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100519042022390