Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14784 111 1e-19 seq2137 100 3e-16 seq15362 89.7 5e-13 seq26811 82.4 7e-11 >seq14784 Length=15745 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||| |||| || || || || || ||||| ||| Sbjct 8845 ATGCAGATCTTTGTGAAGACCTTGACCAGTAAGACCATCACCCTGGAGGTAGAGCCCAGT 8786 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 8785 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 8726 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATAA 24882 || | ||||||||||||||||| |||||||| || | || | || |||| || || || Sbjct 8725 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGA-TGGACACACTCTGTCTGACTACAA 8667 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || | || || | | |||||||| | || ||| | ||||| Sbjct 8666 CATCCAGGAAGAGTCCCCCTTTCACTTGGTCCTCCGCTTGAGGGGAGG 8619 >seq2137 Length=523945 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | |||||| | |||||||| || || || || || || || || Sbjct 116010 ACAATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 115951 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||| ||||| || || || || || Sbjct 115950 AGTGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGAC 115891 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || | ||||||||||||||||| |||||||| || Sbjct 115890 CAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGA 115853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || || || || || | ||||||||||||||||| Sbjct 114547 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAG 114488 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | |||| || || ||||| || ||||| || || | ||| Sbjct 114487 CAGCTGGAAGATGGACGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCTTGCAC 114428 Query 24908 TTGGT 24912 ||||| Sbjct 114427 TTGGT 114423 >seq15362 Length=836705 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/203 (71%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || ||||| || || | || ||| | || ||| || Sbjct 451727 GATGCAGATTTTCATGAAAACCCTTACCGG-AAGACCGTCACTCTCAAGGTTGAACCCTT 451669 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| |||||| ||||| || | || |||||||| ||||| || || Sbjct 451668 GGATACAACAGAAAATGTAAAAACCAAGATTCAGGTTAAGGAAGGAATTCCTCCTGAACA 451609 Query 24823 ----ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGAT 24877 | | | |||||||||| || || ||||||| ||| || | || | ||| || Sbjct 451608 GTGAAGACTGACTGATCTTTGCTGGCAATTAGCTGGAAGATG-GACATACTTTGTCTGAC 451550 Query 24878 TATAACATTCAAAAGGAATCGAC 24900 || |||||||||||||| || || Sbjct 451549 TACAACATTCAAAAGGAGTCTAC 451527 >seq26811 Length=67355 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 ||| || | || ||| ||||| | |||| |||||||| | || ||||||| ||| Sbjct 59157 GAACCCTCAGATACAACAGAAATG-TAAAGGCCAAGATCCAGAATAAGAAAGGAATTCCT 59215 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTC 24873 || ||||| ||| | ||||||||||||| || |||||||| | | || | || |||| Sbjct 59216 CCTGATCAGCAAAGACTGATCTTTGCCGGCAAGCAGCTGGA-AAATGGACATACTTTGTC 59274 Query 24874 AGATTATAACATTCAAAAGGA 24894 || || |||||||||||||| Sbjct 59275 CGACTACAACATTCAAAAGGA 59295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449443934507600