Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14784 131 1e-25 seq2137 98.7 6e-16 >seq14784 Length=15745 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||||| ||||| || | ||| | ||| ||||| ||||| || Sbjct 8619 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGAC 8678 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || || | |||| ||||| ||||| ||||| ||||||| | ||||||||| | || Sbjct 8679 AGAGTGTGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8738 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| ||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 8739 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCTA 8796 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| | || | |||||| ||||||||||||||| Sbjct 8797 CCTCCAGGGTGATGGTCTTACTGGTCAAGGTCTTCACAAAGATCTGCATG 8846 >seq2137 Length=523945 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 114420 AGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 114479 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||||| | ||||||||| | || | ||||||||||| Sbjct 114480 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 114538 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||| ||||| ||||| || || |||| | || Sbjct 115491 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 115550 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTC 34878 ||||| ||||| ||||| ||||||| | ||||||||| | || | ||||| Sbjct 115551 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 115604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325372590034730