Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14784 107 1e-18 >seq14784 Length=15745 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || ||||| |||| | ||| |||| || ||||| || || | Sbjct 8619 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGAC 8678 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || || || || || ||| | ||||| || ||||| || || || Sbjct 8679 AGAGTGTGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8738 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| | || | |||||| | ||||| Sbjct 8739 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 8798 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || | || ||||| || ||||| |||||||| Sbjct 8799 TCCAGGGTGATGGTCTTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384840465724470