Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq61401 199 8e-47 >seq61401 Length=4951 Score = 199 bits (220), Expect = 8e-47 Identities = 544/821 (66%), Gaps = 13/821 (2%) Strand=Plus/Minus Query 3009 GACTGCGTGAGGTCGGTCCAGCCGGCGTCGTACTCCAGCCGTTCGTCATTGATTACGTCG 3068 || |||| ||| || ||||| ||||| ||| | || || || | | ||| || || Sbjct 2637 GATTGCGCGAGATCCGTCCATCCGGCATCGAATTCGAGTCGGCCCTTGCCGATCAC--CG 2580 Query 3069 T-AGGC-TTTCAGCACCAGCCGCGTTTTCACCTCGGGCGAGTAGTTGAAGACGGTCACGC 3126 |||| ||| || || |||||| ||| ||||| ||||||||||| | || | || Sbjct 2579 ACAGGCCTTTGAGTACGAGCCGCCCTTTGACCTCTGGCGAGTAGTTAAGCGCGACCGCGT 2520 Query 3127 CGGGGAAGAACTGGCGCACCAGCTGTGCAACGCCGGTGCCCATGCCGGTCGCATCCA-CG 3185 || |||||||||| || ||||| || | ||| |||||||||| || | || Sbjct 2519 TCGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCG 2460 Query 3186 CCGATGTAGGTCACCCAATAGCGCTTGGTGATCTGCTCGATGAACGCGGCCTGGTCCTTG 3245 || ||||| ||| | || ||||| || ||| |||||||| | | | Sbjct 2459 CC-ATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGGGCTTCG 2401 Query 3246 AACTCCATGCCCTTGAACTGATGGCGTTCCAGCACGCGGAACTTGCCGCAGGGCACCAGC 3305 || |||||||| | || | | ||||||||| |||||||| | ||||||| | Sbjct 2400 AAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCC 2341 Query 3306 GGCGGGGCTACCACCACGATGCCCGCGCTGTCGCCGGTCTCGGCCGGGTCGTAGCCGATC 3365 || || || ||||| | | ||| || ||||||| || ||||| ||||| | | Sbjct 2340 GGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCCGTATAACGCTGGGTCATAGCCCACC 2281 Query 3366 CACACAGCGCGGTCGCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCG 3425 || |||| |||| || | || ||| || | |||||| |||| ||| ||| Sbjct 2280 CATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGTAGCTC- 2222 Query 3426 ACCCAGCTATCGACCTGACAGGGCTGCAGCATCGTGAGCGGGAATA-CGCTGGCGCTGTC 3484 ||| ||| ||| ||| |||||| | ||||||||| | || || || |||| Sbjct 2221 --CCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCG-TGTC 2165 Query 3485 ATCCACGAACTCGCACATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCGCGGCGCAG 3544 || | ||| | ||||||| ||| || ||||||||| |||||| ||| | | ||| Sbjct 2164 GTCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAG 2105 Query 3545 TTCCTCGATATCGAACAGGTCACAGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTG 3604 || | | ||||||||||| || || | | |||| || || ||||||||||| Sbjct 2104 CTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTG 2045 Query 3605 GCGCCAGATCGCGTCCTCGCAACGCCGGCCACCCATCAGGCGCGCGTG-GCTCACATCCA 3663 |||||| | ||||||||| ||||||| | || | ||| ||| || |||| Sbjct 2044 GCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCT-ACGTCCA 1986 Query 3664 GCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGA 3723 | || | || | | | | ||| || |||||| | |||||||||||||| Sbjct 1985 GGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAAT 1926 Query 3724 AGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTCTTGTGCA 3783 | || |||||| |||| | || |||||| ||| ||||| || | |||||| | |||| Sbjct 1925 ACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCACTTGCTATGCA 1866 Query 3784 TCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCG 3824 |||||||||| || ||||||||||| | | |||||| Sbjct 1865 TCGCCATGCCCGATGCAACCTTGTTCAGTTTGCGAAAACCG 1825 Score = 141 bits (156), Expect = 2e-29 Identities = 274/396 (69%), Gaps = 10/396 (3%) Strand=Plus/Minus Query 1956 CCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGCGGTACCCGTAACGCG 2015 ||||| ||||| | || ||||| | ||| | || ||||||||||| || ||| Sbjct 3735 CCAAACCCGCCTGTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCG 3676 Query 2016 GCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGCCACC 2075 || |||| ||| || || |||||| |||||||| || || ||| | |||| ||| Sbjct 3675 GCGAGCAGGTCGTCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACC 3616 Query 2076 TCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAACAGG 2135 || |||||||| | ||| | || ||||| || ||||| |||| || | ||||||| Sbjct 3615 TCGGACACCGGGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGG 3556 Query 2136 TTCTTGAAATTGCCCGG-CCCGCGCGACTGCCGCAGTGCGTCGCGTAACGCATCCACGTC 2194 || ||| |||||||| ||| || | | ||| || ||||| ||||| || ||||| Sbjct 3555 TTGCGGAAGTTGCCCGGTCCCTTGCTAAT-TTTCAGCGCCTCGCGCAACGCGTCTACGTC 3497 Query 2195 --CATGCCCTCGGGTTGGGGATCGGTCATGTAGAGGATGTAGCCGGCGTGCGAACCGTTG 2252 | || | | || | || |||||||| ||||| ||||||||||||| |||| Sbjct 3496 TTCCTGTTTCTGCGCTGCG--TCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTC 3439 Query 2253 TTGTAATACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTA-CG-G 2310 | || || || || || ||||| |||||||| |||| | | || || || | || | Sbjct 3438 TCATAGTAGCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCG 3379 Query 2311 CTGGCATCCATTCCGGCAGGCCGTAGATTTCCTGAT 2346 | | || |||| |||||||| || | ||||||| Sbjct 3378 CCGAGAT--ATTCGGGCAGGCCATACACCTCCTGAT 3345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107055746940980