Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq44690 113 3e-19 seq6800 91.5 1e-12 seq30395 86.0 5e-11 >seq44690 Length=446859 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || || || | ||| Sbjct 423472 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATCCTGAGTACA 423413 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 423412 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTTGCCTGACGCTGAGAGTCATTGAAATAA 423353 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| ||||| | ||| |||| Sbjct 423352 GCAGGTACAGTGACAACAGCAT 423331 Score = 107 bits (118), Expect = 1e-17 Identities = 359/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| |||||||| || | | | ||| || | ||| |||||||| Sbjct 424120 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGCTCTTTTCCATTGAAG 424061 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||||||| ||| | ||| || || || | || || || |||| ||||| Sbjct 424060 AAGTCCTGCAGAAGTT-TCTGAATCTTGGGGATTCGGGTAGAACCACCTACTAGGACAAT 424002 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || || || | |||| | |||| || ||||| || || Sbjct 424001 ATCATGGATCTGGGATTTGTCTAGCTTAGCATCCCGCAGGGCTTTCTCCACGGGATCCAG 423942 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | || | ||| | | |||||||| || | || | |||| | | || Sbjct 423941 AGTGCCACGGAATAGGTCAGCATTGAGTTCTTCAAACCTGGCACGGGTAATGGAGGTATA 423882 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 ||||||||||||| | | || |||| ||||| | | || || ||||| || Sbjct 423881 GAAATCAATTCCTTCATAGAGTGAGTCAATCTCAATACTGGCCTGGGTACTGGAAGAGAG 423822 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 282131 | |||||||| || ||||| || || | || | || | || ||| | || | | Sbjct 423821 CGTGCGTTTAGCCCGCTCACAAGCAGTGCGGAGACGACGGACAGCCCTCTTGTTCTCACT 423762 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | |||| || | |||||| || ||| | ||| | || | || Sbjct 423761 GAT----GTCCTTCTTATGCTTGCGCTTGAACTCGGCAATGAA--ATGGTTGACCATTCG 423708 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||||||||| || || || | || | ||| | |||| | | || | || | Sbjct 423707 GTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAAAGAT 423648 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| || | | | |||||| || ||||| || | ||||| ||||| Sbjct 423647 TCCATCTTCAATAGTGAGGATGGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATAAG 423588 Query 282310 TACATTCATTTC 282321 || ||| |||| Sbjct 423587 CACGTTCCTTTC 423576 >seq6800 Length=71777 Score = 91.5 bits (100), Expect = 1e-12 Identities = 209/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Minus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||| ||||||||| | | ||||| || ||| || ||| || ||| | || |||| Sbjct 56400 TTTCCAATTCATTTCTGGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 56343 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 | | || || ||| ||| || ||||||| |||||| | || |||||| Sbjct 56342 CTTCTCGGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTTAGGCGATTTTG 56289 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 56288 GTCATTGGTAATGGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCCGTCAC 56232 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||| ||||| |||| | ||||| ||||||||||| || || ||||| | | Sbjct 56231 GCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGAACCCCACGAGG 56172 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || ||| ||||||||| | ||| ||||| |||| Sbjct 56171 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTCGTGAGGGG 56112 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 56111 TCGTTCACC 56103 >seq30395 Length=119991 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 50852 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 50793 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| || || || || ||||||||||| || ||||||| Sbjct 50792 ATGGTGCTCCTAAGGAAATGGAATCATACTACCAGGAGATTGGTAGAGCTGGCCGTGATG 50733 Query 131301 GA 131302 || Sbjct 50732 GA 50731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736669843911420