Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq1528 93.3 4e-14 >seq1528 Length=993594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 445/697 (64%), Gaps = 74/697 (11%) Strand=Plus/Minus Query 1096 AAAGAGTAGGTTTCTCTTGAGAGTTAAG-GAAGGCATTTTAAAGAAAAGGCTTAGaaaaa 1154 ||||||||| |||| || || | || | | |||||||||||||| |||||||||||| Sbjct 393605 AAAGAGTAGACTTCTTTT-AGGGACAATAGGATGCATTTTAAAGAAATGGCTTAGAAAAA 393547 Query 1155 aaaTCTGGTGGGCACTTACATATTCTTCCATAAGTTTTGAAAATGAGAACTGTAGTTCTG 1214 | || ||||||||||||| |||| || ||| ||| | || || ||||| ||| Sbjct 393546 ---TTTGTAGGGCACTTACATAGTCTTGCAAAAGCTTTTTAGATAAGGGCTGTAATTCCA 393490 Query 1215 TGATTACAGCTGATTGTATGTCCC---GTGGTAGTGGATGGCCG---------TGGGAGG 1262 || | | | ||| ||||| ||| ||| |||| | ||||||| Sbjct 393489 AAATGAT---TTTTCGTACGTCCCTGGGTGATAGCCGATGCGTGAGTACCATATGGGAGG 393433 Query 1263 AGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAA 1322 | ||||||| || ||||||||||||||||||||||| | | || | || | | | Sbjct 393432 ACAGCAAGGTCCCCATGCAGCAGAGCAGGAACAGGGCAAGTCTGGCAGGTCCTGGAGAGA 393373 Query 1323 TAGAGTAATGC--------------CCACACACCCCCACCTGCCCCATACCTTAACCTGC 1368 ||| | |||| || |||||||| ||||||||| | || | Sbjct 393372 GAGAATGATGCTGTGAGGTACTGGGCCCGACACCCCCGCCTGCCCCACTTCGGCCACTTC 393313 Query 1369 CCAAGCT-TTCACCACCGAAGCTGTGCCGGACTGAGCCCCA-TCCAGTCTTTCTCTTTGT 1426 | || || | || | |||| | || |||||| | || || | || | Sbjct 393312 AGACACTGTTGAGCAACC--GCTG---CTGA---AGCCCCTCTGGAGGCTGCCCCTAGAT 393261 Query 1427 CTAGGGAAACTCGACCGCACCCACCAGCATCAATGG-CTGTAGGACCTATCGATACCTGA 1485 || | || | ||| | |||| || | | || | | ||||| || |||||| Sbjct 393260 CTGGTGAGGCAAGACTGTGCCCA--AGAAGGAGCGGACAGCAGGACGCCGCGGTACCTGT 393203 Query 1486 GGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTGCTAGAGTGAG 1545 | |||| || || | |||||| ||| | || ||| || ||||| || ||| || Sbjct 393202 GTGGGAGACCATGGTGGGAGAGCGCGT-----CTGCCTTGACAGCAGCTTCTTGAGCCAG 393148 Query 1546 ATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGGAGGAGCACT 1605 ||| | | || | | || ||| | ||||||||||| ||| | |||| || | Sbjct 393147 ATGAGTTGGCAGTGGTCTTCAGGACAT--ATATAAAGGGCCAGTCATGAGGAAGAAGAAC 393090 Query 1606 AA---AAGTACCGCCCACGGTAAAGTCATTACTCAGA-----------AAACA-TTTCAA 1650 || | || ||||||| || || ||||| |||||| ||||| |||||| Sbjct 393089 AATCGATGTCCCGCCCATGGCGAAATCATTGCTCAGATTTTCTCCAAAAAACACTTTCAA 393030 Query 1651 ATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTACCCTT 1707 |||| ||| | | | |||| | |||||| ||| ||||||| || | |||||||| Sbjct 393029 ATTTCTGCTACCCAAGGTTGGGTGAAAGCAGAGCTGGAAGGAAGTGCTGAGGTTACCCTC 392970 Query 1708 AAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744 || ||||||||||| |||| || | ||| |||||| Sbjct 392969 AACTTGGGCAGATGCCTGACTCA--GTATAGACACAC 392935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 330/505 (65%), Gaps = 42/505 (8%) Strand=Plus/Minus Query 288 ACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAATC-----TTAAGGCTCTTTGC 342 |||||| |||||||| ||||| || || | |||| | ||||| ||| ||| Sbjct 395268 ACAACTCACAGCAGACTTCTCTCACTTAGCTGTCACTCTCCCGTTTTTAAGACTCCCTGC 395209 Query 343 ATTCCTGCCATTCA-AAAGGAACAGGGTCAACCACATGGTCTTCAG-TGACCTTCCAGGC 400 ||| ||||||||| |||||||||||||| || |||| || ||| ||| || | ||| Sbjct 395208 ATTTCTGCCATTCCGAAAGGAACAGGGTCTACTGGATGGCCT-CAGATGAACTACTGGGC 395150 Query 401 TTCAGTGCCCACTAATTTCAGG------------CACTTTGAAAACATTTCTAAAACACA 448 | | | | || | |||||| ||| |||||||| || ||||| | Sbjct 395149 TCCTGAGTTCATTGATTTCAATGTACGTTCCACACACATTGAAAACTGTTGTAAAATAGT 395090 Query 449 CTGTATGAACACttttttttGATAGCTGTCTGTAGGCATAGAAATGTCTGGTGCGCGT-- 506 | ||||| ||| |||| || | || || |||| |||||| | || | | ||| Sbjct 395089 CAAGATGAATCTTTTACATTGAAAGGTATCCGTGGGCACAGAAATTTTTGTTTCTCGTGC 395030 Query 507 ----TGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACTATTTGTGTCATT 562 || |||| || || | || || | |||| || | | ||| |||| ||| Sbjct 395029 ATGATGAAATTTGAGCTTGTCAAGCTGTTGTATGATTTCGCTGA---TATCAGTGTTATT 394973 Query 563 AAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGG 622 || |||| | |||| || | || |||||||||||||| ||||||||| ||||||| Sbjct 394972 TAATAATGGTCTGATTGCCTTGAAGTAAGGCAGGATGGCCCGGCTGTTGATGATGTGTGG 394913 Query 623 TGGCTGGGGGCTCACA-GAAAAGCACTGCATGCGG--CACGTGCATGATTTTACTAATCC 679 | |||| | ||| | | ||||| ||| |||| ||| || |||| | | ||| Sbjct 394912 CTGTTGGGAG-TCAGAGGCGAAGCATGGCA-GCGGGTAACG-GCTGGATTCTGGCACTCC 394856 Query 680 CTTATTCTCTTTCTGCTTCTGTG---GAAGGAGAGGAAATGGGTGAGCATTAGTGTTGTA 736 | ||| ||||| | | ||||| |||| | ||| |||||| | |||| ||| | Sbjct 394855 C--ATT-TCTTTATTCAGCTGTGCAACAAGGGGGAGAAGTGGGTGTGGGTTAGATTTGCA 394799 Query 737 A-AGCAGTCAGAAACCCTGATAGCT 760 | | ||| ||||| ||| | |||| Sbjct 394798 ATAACAGCGAGAAATCCTAACAGCT 394774 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/112 (78%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 169 CACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCA 228 |||| || || |||||||| | || ||||||||| | | ||||||||||||| ||||| Sbjct 395594 CACAAAA-ATCCAAAACAGATCATAAGAAAAATTTAATGAAATTTATTAAATAGGTTTCA 395536 Query 229 AGGGCTTCTTTAAGAAGCATTAACAA-TCTAACAACATTTTATAAATAACAA 279 |||||| || ||| ||||||||||| ||| | ||| ||||||| ||| Sbjct 395535 AGGGCTCCTCCAAGGAGCATTAACAACTCTCAATACA----ATAAATATCAA 395488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438117767060000