Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9362 111 3e-19 seq25256 100 6e-16 seq15362 91.5 3e-13 seq353 91.5 3e-13 seq15361 87.8 4e-12 >seq9362 Length=45889 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || | ||| || || | |||||| | | | || |||| || || Sbjct 23829 TGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACATCCATCTTGCAGCTGC 23770 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | ||| ||||||||||||||| |||| |||| ||||||||||||| || ||||| Sbjct 23769 TGGACAGGAAAGATTAGTCTTTGCTGATTAGGAGAAATTCCTTCCTTATGCTGGATCTTG 23710 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||||||||||| || ||||| |||||| | || ||||| || ||||| ||||| Sbjct 23709 GCCTTTACATTTTCTATTGTATCTAAAGGTTCAATCTCAAAAGTAATGGTCTTCCCTGT 23651 >seq25256 Length=205224 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 || |||| ||| || || | |||||| || || |||||||| || || |||||||| ||| Sbjct 45240 CCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGA 45181 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | | || || || || || || ||||||||||| || || || || || ||||| || Sbjct 45180 GTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATG 45121 Query 82707 CCTTCCTTATCTTGAATCTTTGC 82729 ||||| ||||| || ||||| || Sbjct 45120 CCTTCTTTATCCTGGATCTTGGC 45098 >seq15362 Length=836705 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 82604 TAAG-TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662 |||| || | |||||| || || || || || || ||||| | | | || ||||| | Sbjct 451516 TAAGATGAAAAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCA 451575 Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA----TCTGGAGGTATTCCTTCCTTATCT 82718 | | || ||||||||||| |||| | || | || ||||| |||||||||||| | Sbjct 451576 GCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTCAGGAGGAATTCCTTCCTTAACC 451635 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | |||||||||||| | ||||| ||||| || | | ||| | ||| Sbjct 451636 TGAATCTTGGTTTTTACATTTTCTGTTGTATCCAAGGGTTCAACCTTGAGAGTGACGGTC 451695 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || | || |||||||| Sbjct 451696 TT-CCGGTAAGGGTTTTCATGAAAATCTGCAT 451726 >seq353 Length=562904 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||| ||| || || || || || || ||||| | | | | || ||||| ||||| Sbjct 101339 GTGAAGAACAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGTTG 101398 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || |||| ||| |||| ||| | | ||| | ||| |||||||||||||| || ||||| Sbjct 101399 CTTGCCAGTAAACATTACTCT--GCTCATCAGTAGGAATTCCTTCCTTATCCTGGATCTT 101456 Query 82727 TGCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| | ||||| Sbjct 101457 GGCCTTTACATTTTCTACTGTATC 101480 >seq15361 Length=270988 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct 65976 TCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTATTTCCTTA 66035 Query 82716 TCTTGAATCTTTGCTTTTACATTTTC 82741 || || ||||| || ||||||||||| Sbjct 66036 TCCTGGATCTTAGCCTTTACATTTTC 66061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980812398747130