Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq20081 107 2e-18 seq29914 105 9e-18 seq2137 105 9e-18 seq39364 104 3e-17 seq15141 104 3e-17 >seq20081 Length=325320 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 209769 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 209828 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||||||| |||| Sbjct 209829 GATTCCCCGACGGGGAG 209845 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 209771 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 209830 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 209831 TTCCCCGACGGGGAGG 209846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 209845 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 209786 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 209785 TACTAACGAGGA 209774 >seq29914 Length=84768 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 32634 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 32575 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 32574 CCCCGACGGGGAGAAG 32559 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 32633 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 32574 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 32573 CCCGACGGGGAG 32562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 32562 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 32621 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 32622 TACTAACGAGGA 32633 >seq2137 Length=523945 Score = 105 bits (116), Expect = 9e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 125441 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 125382 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 125381 TCCCCGACGGGGAGG 125367 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 125442 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 125383 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 125382 TTCCCCGACGGGGAG 125368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 139345 GCCCACAAC-TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATAT 139403 || |||||| ||| ||||||||| |||||||||||||||||| | |||| |||||||| Sbjct 125359 GCACACAACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 125418 Query 139404 TAACCACTATACTAACGAGGA 139424 | ||||||||||||||||||| Sbjct 125419 TCACCACTATACTAACGAGGA 125439 >seq39364 Length=62976 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 10579 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 10638 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 10639 CCCGACGGGGAG 10650 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 10578 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 10637 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 10638 CCCCGACGGGGAG 10650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 10650 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10591 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 10590 TACTAACGAGGA 10579 >seq15141 Length=320023 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 261091 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 261032 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 261031 CCCGACGGGGAG 261020 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 261091 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 261032 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 261031 CCCGACGGGGAGG 261019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 139349 ACAAC-TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAAC 139407 ||||| ||| ||||||||| | |||||||||||||||| | |||| |||||||| |||| Sbjct 261015 ACAACCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 261074 Query 139408 CACTATACTAACGAGGA 139424 ||||||||||||||||| Sbjct 261075 CACTATACTAACGAGGA 261091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652186487624800