Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2137 109 5e-19 seq25256 105 6e-18 seq56286 82.4 7e-11 >seq2137 Length=523945 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || | || ||||||||| || |||||||| || || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | ||||| |||||||||| || | ||||| | Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||| ||||||||||| |||||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCAT 116007 >seq25256 Length=205224 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 |||| |||||||||||||||||||||||| || || |||||| ||| | | ||| Sbjct 41323 AGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCG 41264 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | || ||| |||||||||| || | ||||| ||| |||||||| || || || ||||| Sbjct 41263 ATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAG 41204 Query 133653 ATCTGCAT 133660 |||||||| Sbjct 41203 ATCTGCAT 41196 Score = 100 bits (110), Expect = 3e-16 Identities = 151/217 (70%), Gaps = 20/217 (9%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | ||||| |||||||||| Sbjct 40923 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 40865 Query 133522 CCGCGTAAATGAGCC------------------GCTGCTGGTCGGGAGGGATGCCTTCCT 133563 | || | ||||||| |||||||||||||||||||||||| | Sbjct 40864 CAGCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGAGGGATGCCTTCTT 40805 Query 133564 TGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | || |||||| ||| | | ||| | || ||| |||||||||| || | ||||| Sbjct 40804 TATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGA 40745 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| |||||||| Sbjct 40744 TTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 40708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | ||||| |||||||||| Sbjct 45214 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 45156 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 | || | || |||| |||||||||||||||||||||||| || || |||||| Sbjct 45155 CAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTT 45101 >seq56286 Length=35121 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 17703 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 17762 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 17763 CTCTTCCGATTACAGGAATCTTTGTAAAGCATGTACGG 17800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482933330550800