Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12799 241 1e-58 seq257 179 4e-40 >seq12799 Length=317942 Score = 241 bits (266), Expect = 1e-58 Identities = 621/937 (66%), Gaps = 27/937 (3%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 ||| || ||||| | |||| ||| || | ||| |||| || || | ||| || Sbjct 44096 CCAAGGCTTTATGCCTCAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTG 44037 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| || | | | | ||||| || | || || | Sbjct 44036 TGTCAAACTTATTGGCAAACAAGTGGTGTG---TATGAAGAATCCAGTTCAAGTCACCTG 43980 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | |||||| || |||||||| || |||||||| || || || |||| || | Sbjct 43979 CTCCAAAAATGCACACAGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCT 43920 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || || |||| || || |||||||| | Sbjct 43919 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCAG 43860 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | || || | | Sbjct 43859 ACATGTCATACTTAGAG-CTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATA 43801 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || || || || || | ||||||||| |||| | | Sbjct 43800 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGG 43741 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | |||| | | || | || || || ||| || || | ||| || || || Sbjct 43740 ATTTTTTTGTTCTTGAGCACATACCCTACATACTTCCTAGTGACTACAAAATAGGCACTG 43681 Query 162478 CCAGAAAACACGGGTATGCGTATAG-GAGGGGGCTC---TTTGTCTTGACCCGTGTTGAC 162533 || ||||| | || ||| | | ||||||| | |||||| ||||||||| Sbjct 43680 CCTGAAAAGAGAGG----CGTTTCGAGAGGGGGTTGCATTTTGTCAGTCCCCGTGTTGGT 43625 Query 162534 TACCATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAG 162589 | | |||| || || || ||| | ||| ||||||| | | ||| ||| | Sbjct 43624 CAGCTTTCCGTCCACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATG 43569 Query 162590 ACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649 | | || || |||||| |||| | ||| || | ||| |||| | || || | Sbjct 43568 GCATTTTCTCAGTTTCTAGATTGTTTTGGCCCATTAATGACTTGAGCTTCCTGACAATTT 43509 Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 | || ||||| |||| ||||| || | ||||| ||||| || | || ||||| | Sbjct 43508 CCAGGTTGGTTTTAATAGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTG 43449 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 | || | || || || ||||| | |||||| || || ||||| || |||||||| || | Sbjct 43448 CACTCATTCTATAGAGGTCCTGCATACAGTTGAGGTCAGCCTGAACCCGACTCCATGATG 43389 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 ||||||| || ||||||| | | |||| ||||||| || |||||| || | || | Sbjct 43388 CGTACACCACACTCTCCAGCTGACTGGCCACAAAGATGTTACTGAAACAGGATGCAATGC 43329 Query 162830 CCATCACGGCCAGTGAGAAC---ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 | ||||| || || | || ||| || | ||| | || ||||| | ||| || | Sbjct 43328 CAATCACTGC-AGCCAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAATAGA 43272 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 ||||||||| |||||||||||||| | || || ||||| || || || || || | Sbjct 43271 AATTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAACATTTCAATTTTGTGATGAA 43212 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||| |||||||| ||||| || ||||| ||||| || Sbjct 43211 CCACTATAGAATATGCTATTGGAAACTCTGCCTCTTC 43175 >seq257 Length=475938 Score = 179 bits (198), Expect = 4e-40 Identities = 223/304 (73%), Gaps = 1/304 (0%) Strand=Plus/Minus Query 171794 CCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCC 171853 || || || || || || ||||| ||||| || | ||| | ||||||| || || ||| Sbjct 92609 CCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACAGCCCTCATCATCC 92550 Query 171854 ACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACC 171913 | |||||| ||||| || || | || || || |||||| || | || ||||||||| Sbjct 92549 AGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCACC 92490 Query 171914 CGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTT 171973 ||||| || | |||||||| ||||| || || |||| |||||| ||| |||||||| Sbjct 92489 TTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTTT 92430 Query 171974 TCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGA 172033 || |||||| |||| | || ||||||||||| || || | ||||| | | |||| Sbjct 92429 TCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTGC 92370 Query 172034 AGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCACC 172093 |||||||||| ||| ||| | |||||||||| | | |||| ||||| || |||| | Sbjct 92369 AGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCGCTTTTTCATCTTGGGTCACCA-C 92311 Query 172094 TGTC 172097 |||| Sbjct 92310 TGTC 92307 Score = 131 bits (144), Expect = 2e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| || || ||||| |||| ||||| || | ||| |||||||||| Sbjct 95142 ACAGTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCCT-- 95085 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||||| || || ||||| || || || | ||| || || || ||||||||| Sbjct 95084 -TCCCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGACGTAGTCCCG 95026 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| || ||| |||| | || || || || || || | |||||||| | Sbjct 95025 TTGGGGTGTGAGACAATTTCAGTATTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 94966 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || ||||| ||||| | ||| | ||||||||||| || |||| ||||| || || Sbjct 94965 ATCACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTAGGTGGTCTTCAAAAAAT 94906 Query 171743 TCATAGTG 171750 | |||||| Sbjct 94905 TTATAGTG 94898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577848723632000