Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq61401 403 5e-108 >seq61401 Length=4951 Score = 403 bits (446), Expect = 5e-108 Identities = 398/512 (78%), Gaps = 2/512 (0%) Strand=Plus/Minus Query 7694 GAACCGCACCACCTCCTCCCCGATCCAGTCATTGACCGCCAACAGGCGGTCCTGCAATGG 7753 ||||||||| ||||| || |||||||| |||| || | | | ||| ||| | || Sbjct 3841 GAACCGCACGACCTCGTCGCCGATCCACTCATCGAGCTGCGTAAAGCGACTCTGTAGCGG 3782 Query 7754 CTTCACCTCGTTGCGCGC-GAACACCAGGGCGGCCTTCTCCACGTCGCCGAATCCGCCGG 7812 | | ||||| ||| | ||| ||| ||| ||| | || || | || || ||||| | Sbjct 3781 TTCGATTTCGTT-CGCACCGAATACCTCGGCCGCCGTGTCTGCGGCCCCAAACCCGCCTG 3723 Query 7813 TGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTGGTCGT 7872 | ||| |||| | | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 3722 TATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGTCGT 3663 Query 7873 CGCGCGTGACGTTTTTGACGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTA 7932 | ||||| ||||| |||| ||| | |||||||||||||| | |||||||||||||| | Sbjct 3662 CTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACACCGGGA 3603 Query 7933 GCAGCTGGATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAGGTTGCGGAAATTGC 7992 ||||| || || ||||| || ||||| |||||||||||||||||||||||||| |||| Sbjct 3602 TTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGAAGTTGC 3543 Query 7993 CCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACATCCTCTTGCCTCTGCG 8052 |||| |||||| | | |||| ||||||||||| || ||| || || || || |||||| Sbjct 3542 CCGGTCCCTTGCTAATTTTCAGCGCCTCGCGCAACGCGTCTACGTCTTCCTGTTTCTGCG 3483 Query 8053 CCGCGTCGGTCATGTACAGGATGAAACCGGCGTGGGAGCCGTTTTTGTAGTACCGGCGGC 8112 | ||||| |||||||||||||| || |||||||| ||| |||| | ||||| || || | Sbjct 3482 CTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTAGCGACGAC 3423 Query 8113 GGAACAGCGTGGCCGATTCGTTCAACCATGTGGCGTTCAACGCGGACAGGTATTCCGGCA 8172 | |||||||| ||||| ||||||||||||| |||| || |||| || ||||| |||| Sbjct 3422 GAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGATATTCGGGCA 3363 Query 8173 GGCCGTACACCTCCTGATTGATGTCCGGTTCC 8204 |||| ||||||||||||||||| || |||||| Sbjct 3362 GGCCATACACCTCCTGATTGATATCGGGTTCC 3331 Score = 242 bits (268), Expect = 9e-60 Identities = 548/821 (67%), Gaps = 21/821 (3%) Strand=Plus/Minus Query 8899 CATGAACGACGCGGCGAAGTCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTGCTGAT 8958 |||||| || |||| |||| ||| ||||| ||||| || || |||||||||| ||| Sbjct 2644 CATGAAGGATTGCGCGAGATCCGTCCATCCGGCATCGAATTCGAGTCGGCCCTTGCCGAT 2585 Query 8959 CAC-GTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACTTCCACGGAATAGGTGAAGC-CT 9016 ||| | | || | ||||| || || ||| || || || ||| | |||| | Sbjct 2584 CACCGACAGGC-CTTTGAGTACGAGCCGCCCTTTGACCTCTGGCGAGTAGTT-AAGCGCG 2527 Query 9017 TCGGCGTCCGGGCGGAACTTCTGCACCAGGCGGAACACCGCATCGCCGATGCCGGTCCGG 9076 | |||| ||| ||||| | || || || | || | | ||||||||||||| | Sbjct 2526 ACCGCGTTCGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTG 2467 Query 9077 TCGATGCCCACGTAGGCGACGTTGTAGCGCTCAGTGACGCGCCGGATGGCGCCGGCCTGT 9136 ||||| ||| ||| | |||||| | || |||| ||||| ||| ||| ||||||| Sbjct 2466 TCGATCGCCATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGG 2407 Query 9137 TCCTCGTAGTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGC 9196 | ||| |||| |||||||| | || | | | ||||||||| |||||||| || ||| Sbjct 2406 GCTTCGAAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGC 2347 Query 9197 ACCAGGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNnnnnnttGGGGTCG 9256 ||| || || ||||| Sbjct 2346 ACCGCCGGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCCGTATAACGCT---GGGTCA 2290 Query 9257 TAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAGTCCTCC 9316 ||||| ||||| || || |||| |||| || || ||||| | ||| |||||| ||| Sbjct 2289 TAGCCCACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCC 2230 Query 9317 CATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCATCGA-GAGCGGAAACACGGACGC 9375 | || ||||| | |||||||| | |||| || ||| |||||| || | || || Sbjct 2229 CGTAGCTCCCACGAATCCACCATGCAGCGC-TGCAAGTCGGCGAGCGGGAAAATCGATGC 2171 Query 9376 GTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAAT----CGAGTTCGCTGTACT 9431 ||||||| ||||| ||||||| |||||| || || || | |||||||| Sbjct 2170 CGTGTCGTCAATGAAGTGACACATCAACAGGTTCA-GATATTCCTCGGG---GCTGTACT 2115 Query 9432 CCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTCTACCG 9491 | |||| || || | | | |||||||||||||| ||||| | |||||| || |||| Sbjct 2114 CGAGCCCCAGCTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCG 2055 Query 9492 TCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGT-TGCGCAGCGCGGTGTG- 9549 ||||||||||||||||||| | || |||| || |||| |||| ||||| |||| Sbjct 2054 TCACGATCTGGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCG-AGCGCCTTGTGT 1996 Query 9550 GCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGA 9609 ||| ||||| | | | || | | |||| || |||||||||||| | |||||| Sbjct 1995 GCT-ACGTCCAGGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGT 1937 Query 9610 CCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCA 9669 |||||| | || ||||||||| || ||| || ||||||||||| || |||| | ||| Sbjct 1936 CCAGAATGAATACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCA 1877 Query 9670 GTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTT 9710 | | || ||||||||||| || || |||||| ||||| Sbjct 1876 CTTGCTATGCATCGCCATGCCCGATGCAACCTTGTTCAGTT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127762291956560