Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7557 100 9e-18 seq12995 98.7 3e-17 seq10596 98.7 3e-17 seq2137 98.7 3e-17 seq6702 80.6 8e-12 >seq7557 Length=158942 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 145025 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 144966 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 144965 CCCGGGTTTCGGC 144953 >seq12995 Length=86419 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 290 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 349 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 350 CCGGGTTTCGGC 361 >seq10596 Length=196668 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 90315 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 90374 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 90375 CCGGGTTTCGGC 90386 Score = 89.7 bits (98), Expect = 2e-14 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTC 2824 || |||||| |||||||||| |||||| ||||||| ||||| | |||||||||||||||| Sbjct 84889 ATTGCTGAAATAGCTCAGTTAGGAGAGTATTAGACAGAAGAGCATAAAGGTCCCTGGTTC 84948 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 84949 AATCCCGGGTTTCGGC 84964 >seq2137 Length=523945 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 125936 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 125877 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 125876 CCGGGTTTCGGC 125865 >seq6702 Length=162276 Score = 80.6 bits (88), Expect = 8e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct 63344 TGGCTGAAATAGCTCCGTTGGGAGAGTGTTAGACTGAAGACCTAAAGGTCACTGGTTCA 63286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15835615452150