Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq257 271 9e-68 seq5645 165 9e-36 seq10517 141 1e-28 seq8714 122 1e-22 >seq257 Length=475938 Score = 271 bits (300), Expect = 9e-68 Identities = 252/320 (79%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | | |||||||||||| || | ||| | |||||| ||| Sbjct 92311 GTGGTGACCCAAGATGAAAAAGCGCTGCTGAACACACCCGTTTCCTTACGATGCTCTCTG 92370 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || |||||||| || ||||||||||||| | | | || || Sbjct 92371 CAAAGTCCCCACGAAGTCCTGATTGTGACGTGGCAGAAAATCAGGGCTGTGAGCCCGGAA 92430 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||| ||||||| || ||| |||||||| Sbjct 92431 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGCTCCAGCCTGCCTATGAGGACAAG 92490 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||||||| |||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 92491 GTGAACATCACCGAGCTGGGACTCCATAACTCAACCATTACCTTCTGGAATACCACCCTG 92550 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| || ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 92551 GATGATGAGGGCTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 92610 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || |||||||||||||| || Sbjct 92611 GTAGCCTGCCTCACCCTTTC 92630 Score = 208 bits (230), Expect = 9e-49 Identities = 215/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||||||||| |||||||| || || | Sbjct 94872 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTTTTTGAAGACCACCTAAATATTA 94931 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || |||||||||||||| || | ||| ||| | ||||| | || ||||||| | Sbjct 94932 CTTGCTCTGCCAATGCCCGGCCAGCCCCTGTGATCTCCTGGAAAGTCTCTGGGTCAGGGA 94991 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| |||| || || || | || || | || || ||||| || || ||||| || | Sbjct 94992 TTGAGAACAATACTGAAATTGTCTCACACCCCAACGGGACTACGTCCGTCACCAGCGTCC 95051 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| |||| Sbjct 95052 TCCATGTCAAAGACCCCAAGAGTCAGATGGGGAAGGAGGTGATCTGCCAGGTGCTACACC 95111 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| ||| ||||||| | ||| |||| Sbjct 95112 TGGGTACTGTGACCTACTTCAGGCAAACTGTGAACAAAGGTA 95153 >seq5645 Length=125407 Score = 165 bits (182), Expect = 9e-36 Identities = 147/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 12052 CTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 11993 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||||||||| |||||||||||||||||||| || ||||| || | Sbjct 11992 GGGCACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 11933 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| ||||| || || || |||||| || || || | Sbjct 11932 CACCACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAGAGGAAGATCTGA 11873 Query 147162 GGGG 147165 |||| Sbjct 11872 GGGG 11869 >seq10517 Length=228297 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| | |||||||| ||||||||||||||||| ||||||||| || |||| |||| Sbjct 171431 AGGGTTACCTCGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGAAGGAAGTGA 171490 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| | ||| ||||| |||| |||| ||||| | ||||| || |||| Sbjct 171491 TGCCCCTGGCTGAGAACCACA------------GCCCAGACATCAGCGAGCACGTGAACT 171538 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| ||||| || || |||||||||| || ||| Sbjct 171539 CCCTGGGGGAAAAGCTGAAGACTCTCAGGCTGAGGCTGCGACGCTGT 171585 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 173688 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 173747 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||||| |||||||||| | |||| Sbjct 173748 TAGAAGCCTACATGACAATGAGAATG 173773 >seq8714 Length=109580 Score = 122 bits (134), Expect = 1e-22 Identities = 203/291 (70%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||| || | ||| ||| ||||||| |||||| |||| |||||||| Sbjct 19680 GTACTCTCTGGTATTCATCACTGGCCTAGTTGGCAACATCCTGGTAGTCCTGGTCCTCAT 19621 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||| |||| | ||||||||||||| ||| || ||||||||| || ||| Sbjct 19620 GCAATACAAGAGACTCAAAAGTATGACCAACATCTACCTTTTTAACCTGGCCATTTCTGA 19561 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACT-GGT 8787 |||||| | | |||| || || || |||||| ||| | | || || |||| ||| Sbjct 19560 CCTGCTCTTCCTCCTCACACTGCCTTTCTGGATTGACTACAAGCTGAAGGATAACTGGGT 19501 Query 8788 GGGTGG-GACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 ||| || | |||||||||||| | || |||| | || | | | Sbjct 19500 ATTTGGTGATG---------GCATGTGTAAGTTCCTCTCAGGGCTTTACTACATAGGCTT 19450 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||||| || | || ||||||||| |||| || ||||| || || || Sbjct 19449 GTACAGCGAGATCTTTTTCATCATCCTGCTGACCCTTGACAGATACCTGGC 19399 Score = 120 bits (132), Expect = 4e-22 Identities = 200/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||||| | ||||||| ||||| | | |||||| Sbjct 72522 GTATTCCCTGGTGTTCGGGGCTGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCAC 72581 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||| |||||||||||| |||||| || |||| || ||| Sbjct 72582 AAAATACAAGAGGCTCCGGATTGTGACCAACATCTACCTGTTTAATTTGGCGATTTCTGA 72641 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | | | |||| || Sbjct 72642 CTTGCTCTTTCTATTCACTCTGCCGTTCTGGATTCACT--ATGTGGCGTGGAA----TGA 72695 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | |||| |||||||||||| | || |||| | ||| |||| Sbjct 72696 GTGGGTCTTTGGTCACCGCATGTGTAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTA 72755 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || | || ||||||||| |||| | ||| |||| || || Sbjct 72756 CAGCGAGATCTTCTTCATCATCCTGCTGACGATAGACCGGTACCTGGC 72803 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||| || ||||||||| |||| ||||| | | ||| | || |||| || |||||| Sbjct 73111 GCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCTTACAAC 73170 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGA--AGCGC 9313 | | ||| || | | ||| | || | |||| | |||||||||| || || Sbjct 73171 CTGGTTCTCCTTCTCTCTGTTTTTCAAACGACCTTCTTTGAGACAGACTGTGAGAAGAGC 73230 Query 9314 GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 |||| ||||| ||||| | ||||| | ||| ||||||||| | | |||||||||| Sbjct 73231 AA-GCAGC-TGGACCTGGCCATGCTGGTGACGGAGGTGATCGCCTACTCGCACTGCTGCG 73288 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTC 9424 |||||||||| |||||||| || || || || ||||||||| | |||||| Sbjct 73289 TCAACCCCGTGATCTACGCCTTCGTCGGTGAGAAGTTCCAAAAACACCTTC 73339 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| | | ||||||||| ||||||||| Sbjct 18964 TGGACCTGGCCTTGCAGGTGACGGAGGTGATCGCCTACTCGCACTGCTGCATCAACCCCG 18905 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || || || || ||||||| Sbjct 18904 TCATCTACGCCTTCGTCGGTGAGAAGTTCC 18875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582899625288000