Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14784 104 2e-17 seq2137 102 7e-17 >seq14784 Length=15745 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 || |||||||| || | || || | | || ||||||||||| || ||||| |||||| Sbjct 8661 TGGATGTTGTAGTCAGACAGAGTGTGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAAC 8720 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 | ||||||||| | || | || ||| ||||| |||||| ||| | | | | | Sbjct 8721 CTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 8780 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 ||||| || | || ||||||| ||||| || |||| ||||| || |||||||| ||| Sbjct 8781 GTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTACTGGTCAAGGTCTTCACAAAGATC 8840 Query 35732 TGCAT 35736 ||||| Sbjct 8841 TGCAT 8845 >seq2137 Length=523945 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| ||||||| ||||||||| | || | || ||| || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || |||||| ||| | | | | | ||||| || | |||||||||| ||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || ||||| ||||| ||||| || || ||||||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| || | || || || | || ||| Sbjct 114423 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 114482 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| ||||||| ||||||||| | || | || ||||||||| | Sbjct 114483 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 114542 Query 35648 ATCTT 35652 ||||| Sbjct 114543 ATCTT 114547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450339031003600