Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4223 266 4e-66 seq56286 132 7e-26 seq1865 125 1e-23 seq1414 120 4e-22 >seq4223 Length=550205 Score = 266 bits (294), Expect = 4e-66 Identities = 615/920 (67%), Gaps = 15/920 (2%) Strand=Plus/Minus Query 39267 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCC 39322 |||| ||| |||||| |||| || | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 39323 ATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 39382 || | | ||| | ||| || | ||||| || || ||||| || |||||| || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 39383 TTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAA 39442 | ||||| || ||||| ||||| | | || | || |||| | | || Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGC 266828 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 || | ||| ||||| |||||||| || || ||||| | |||||||| || || Sbjct 266827 ATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTG 266768 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || || ||||| | ||||| || || || || | ||| || || | | | || Sbjct 266767 AGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATG 266708 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || | | ||| || || ||| || | | ||||| ||||| | |||||| Sbjct 266707 ATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCA 266648 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 |||||||| |||| || |||||| ||||| | ||| || ||||||||||| |||||| Sbjct 266647 AAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGC 266588 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 | || || | || |||||||| ||||| |||||||| |||||| ||| ||| Sbjct 266587 ACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAA-----GATTCCT 266533 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCAC 39799 || || | ||||| || || | | ||||| | | | || || | | ||||| Sbjct 266532 TCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAA 266473 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | |||||||| || |||||||||||||||||||| | || || ||||| |||||| Sbjct 266472 GGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGA 266413 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | | |||| | || |||| || || || || | |||||||||||||| ||| Sbjct 266412 AATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 266353 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 | |||||||| || || || || || | || ||||| | ||||| ||||| || || Sbjct 266352 CGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACT 266293 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||| | ||| | ||| |||| |||||||| ||||| |||||||| | ||||| || Sbjct 266292 TCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAA 266233 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-CCAGTCATTGAT 40098 |||| ||||| |||||||| | || || | || | || ||||| | || Sbjct 266232 GCCAGAACATGAGATATAAAATACCTCTCCTCAAG-CTCTAGGGCTTCCCAGTGCTGAAT 266174 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 | || || | | | || || ||||||| |||||| || ||||| || || ||||| Sbjct 266173 GTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACAT 266115 Query 40159 GTTCCATATATCACGATATT 40178 | ||| |||||| | |||| Sbjct 266114 CTGCCAAATATCATGGTATT 266095 >seq56286 Length=35121 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || | ||||| |||||||| ||||| |||||||| ||||| | ||| Sbjct 10522 TGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATAGAC 10581 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 10582 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 10641 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 10642 TTTCTTATACCAT 10654 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 29837 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 29896 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | |||||| | || || ||| |||| ||||| || |||| Sbjct 29897 GGATGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 29956 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| |||||||| |||||||||| Sbjct 29957 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGAATTACTTTCATGG 30007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 18542 ATATAGCTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACA 18601 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 18602 CATCAAAGACCA 18613 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || || || || | | | | Sbjct 18975 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 19034 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || ||||||| || Sbjct 19035 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19094 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 19095 TCCAGGTAAATAGC 19108 >seq1865 Length=140298 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| | Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 39759 CAAC 39762 | || Sbjct 110711 CTAC 110708 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 39327 ||| |||||| |||| || | |||| ||| ||| | | ||||| |||||||| | Sbjct 112287 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCT 112228 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 112227 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTC 112168 Query 39388 CATGAAATCAAACGGATT 39405 ||| || ||||||||||| Sbjct 112167 CATAAAGTCAAACGGATT 112150 >seq1414 Length=619926 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGCC 513362 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 513361 ACCACTCTTTCCCC 513348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686216138338800