Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4223 188 6e-43 seq5645 100 2e-16 seq1865 100 2e-16 seq1414 89.7 4e-13 seq1260 86.0 5e-12 >seq4223 Length=550205 Score = 188 bits (208), Expect = 6e-43 Identities = 561/847 (66%), Gaps = 30/847 (4%) Strand=Plus/Plus Query 43719 AATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAG 43778 |||| ||||| || ||||| ||||| || ||| |||| || |||||| |||| || | Sbjct 266095 AATACCATGATATTTGGCAGATGTATAAGAAAATGGAGGCTTCCTTTTGGGCAGCTGAGG 266154 Query 43779 AAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACA 43836 | || | | | |||| || | ||||| ||| || || | | | || | | Sbjct 266155 AGGTGG-TCTCTCTAAGAACATTCAGCAC--TGGGAAGCCCTAGAGCTTGAGGAGAGGTA 266211 Query 43837 TTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTT 43896 |||||||||| ||| |||| || ||||| | || || || ||||| |||||||| || Sbjct 266212 TTTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTT 266271 Query 43897 GGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTC 43955 ||| |||||| ||||||||||| |||| ||||||| || ||||| |||| || | Sbjct 266272 GGTGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGACTTCC 266330 Query 43956 AAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 |||||||||| ||||| || | ||| |||||||| ||||| || || || || ||||| | Sbjct 266331 AAATTGCCATGGAAAACATACGTTCTGAAATGTATAGTCTCCTCATTGACACTTACATTA 266390 Query 44016 AAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAAA 44074 | || | || ||| | | | || ||||| || || | | ||| | || Sbjct 266391 AGGACTCCAAAGA-AAGTAAATTTCTCTTCAATGCCATTGAGATGATGCCTTGTGTAAAG 266449 Query 44075 CATAAAGCAGACTGGGC----CCTT-AAATGGATAAATTCAAATGATTCTTTTGGAGAAC 44129 | || ||||| ||||| |||| | |||| | | | | | | | | |||||||| Sbjct 266450 AAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACA--AAGAGGCTACCTGTGGAGAAC 266507 Query 44130 GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATAT 44189 | | || || ||||| |||||||| || |||| || || ||||| |||| Sbjct 266508 GTGTGGTAGCCTTTGCTACCGTGGAAGGAATCTTCT-----GGTTCTTTTGCATTGATAT 266562 Query 44190 TTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTC 44249 | ||| | ||||||| ||| | ||||||| | || ||||| ||||| | || || Sbjct 266563 TCTGGCTCAAGAAACAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCA 266622 Query 44250 GTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATA 44309 | ||| ||| ||||| || || ||||| ||| || | | | | || | || | | Sbjct 266623 GAGATATAGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT--GCTAC-ACA 266679 Query 44310 AGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGA 44367 | |||| || | ||| | | | ||| || | | | | || | ||||||||| || Sbjct 266680 AACCTT--TGGAGCAGAGAGTGAAAGAAATCATCATCAATTCTGTTAGGATAGAACAGGA 266737 Query 44368 ATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACC 44426 ||| | ||| || || || ||||| | | || |||| || || || ||||| | Sbjct 266738 ATTCCTCACAGAGGCCTTGCCAGTAAAGCTCACTGGGGTGAATTGTAC-CTTAATGAAGC 266796 Query 44427 AATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATA 44486 | |||||||||| | ||||| | | | |||| |||| || || | || Sbjct 266797 AGTATATTGAATTTGTGGCAGACAGACTTATGCTGGAGCTGGATTTTAGCAAGGTTTTTA 266856 Query 44487 TTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTT 44546 ||| |||| || ||||| |||||||| | ||| || |||||| || || ||||| | Sbjct 266857 GAGTAGAAAATCCTTTTGACTTTATGGAGACTATCTCCCTGGAAGTGAAGACTAACTTCT 266916 Query 44547 TTGAAAA 44553 |||| || Sbjct 266917 TTGAGAA 266923 >seq5645 Length=125407 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| |||||||| ||||| || || |||| || || ||||| ||| Sbjct 11915 TGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGAC 11974 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || || || || || ||||| || || ||||| |||||||| || ||||||||| Sbjct 11975 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 12034 Query 41196 CAC 41198 ||| Sbjct 12035 CAC 12037 >seq1865 Length=140298 Score = 100 bits (110), Expect = 2e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| |||||||| || ||||| |||||| || ||||| ||||| || |||||||| Sbjct 108732 CGGTTTAGCCAAGAAGTGCAGATTAC-AGAAGCCCGCTGTTTCTATGGTTTCCAAATTGC 108790 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| || || Sbjct 108791 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAGGA 108847 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | |||||||| || |||||||| || || ||||| Sbjct 110696 GGAGAACGTGTGGTAGCCTTTGCCGCGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 110755 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| | |||||||| | || ||||| ||||| | Sbjct 110756 TCGATATTCTGGCTCAAGAAACGAGGACTCATGCCTGGTCTCACATTTTCCAATGAACTT 110815 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 110816 ATTAGCAGAGATGA 110829 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||||| ||||| ||| |||||||||| || ||||| ||||| || ||||| |||| Sbjct 107649 TTTGTCGTCTTTCCTATTGAATATCATGATATTTGGCAGATGTATAAGAAAGCGGAGGCT 107708 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || ||||||||||| || || || Sbjct 107709 TCCTTTTGGACAGCTGAGGAGGT 107731 >seq1414 Length=619926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 522410 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 522469 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 522470 AACGGGTTTCAGAGTATCAGCG 522491 >seq1260 Length=354516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 274832 AACAGTGGTTTGCACATCATCATTTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 274773 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| ||| | || || ||| | Sbjct 274772 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAATTGCTCTCCAAAATT 274713 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 274712 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 274671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397065234923350