Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14784 105 8e-18 seq2137 93.3 5e-14 seq25256 91.5 2e-13 seq9362 91.5 2e-13 seq60857 86.0 7e-12 seq2497 86.0 7e-12 seq14075 84.2 2e-11 seq26811 82.4 9e-11 seq15361 82.4 9e-11 >seq14784 Length=15745 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||| | ||||| || || || ||||| ||| | || Sbjct 8845 ATGCAGATCTTTGTGAAGACCTTGACCAGTAAGACCATCACCCTGGAGGTAGAGCCCAGT 8786 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 8785 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 8726 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || |||| | || || | ||||| || Sbjct 8725 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACACACTCTGTCTGACTACAAC 8666 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| | || ||| | |||| Sbjct 8665 ATCCAGGAAGAGTCCCCCTTTCA 8643 >seq2137 Length=523945 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || ||| | ||||| ||||| || || || ||||| ||| | | Sbjct 116008 AATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 115949 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||| || || || || || ||||| || || |||||||| Sbjct 115948 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 115889 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||| | | || ||||| || ||||| || || || Sbjct 115888 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGA 115853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || ||||||||||| || || |||||||||||| | | || ||||| Sbjct 114553 AAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCC 114494 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || || |||| || || || | ||||| || |||| ||||| ||||| Sbjct 114493 GGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCAC 114435 >seq25256 Length=205224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 41196 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 41255 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||| || || || || ||||| |||||| Sbjct 41256 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 41315 Query 27526 CAG 27528 ||| Sbjct 41316 CAG 41318 >seq9362 Length=45889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| |||||| ||||| |||| | |||| || | |||| | ||| Sbjct 23648 CTTACAGGGAAGACCATTACTTTTGAGATTGAACCTTTAGATACAATAGAAAATGTAAAG 23707 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||| | ||||| |||||| |||| | ||||| | ||||| ||| ||| Sbjct 23708 GCCAAGATCCAGCATAAGGAAGGAATTTCTCCTAATCAGCAAAGACTAATCTTTCCTGTC 23767 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||| || | |||| |||| | | |||| || | || |||| ||||||||| Sbjct 23768 CAGCAGCTGCAAGATGGATGTACTTCATCTGACTGCAACATTCAGTAGGAGTCCACTCTT 23827 Query 27607 CATCTAGTCTTGCGTCTT 27624 ||||| || ||| | ||| Sbjct 23828 CATCTTGTGTTGAGACTT 23845 >seq60857 Length=4383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 24759 GTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTC 24818 |||||| || ||| ||||| |||||||| || || |||||||| |||||||| | |||| Sbjct 2704 GTGCAGCAGGTGCCGCAGTCCGAGACCACGCCGTTCTATCCGCGCAGCCCGTACGCGGTC 2645 Query 24819 TCAAAGGTGTTCGCGTACTGGA 24840 | ||| ||||||||||||||| Sbjct 2644 GCCAAGCTGTTCGCGTACTGGA 2623 >seq2497 Length=250854 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 142504 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 142445 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 142444 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 142385 Query 32245 TTCAC 32249 ||||| Sbjct 142384 TTCAC 142380 >seq14075 Length=561159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | | Sbjct 270962 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 271021 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || || ||| | || ||||||| || ||||||||||| Sbjct 271022 GACACCACTGAGAATGTCAAATCTAAAATCCAAGACAAGGAGGG 271065 >seq26811 Length=67355 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||| | ||| | ||||||||||| || ||||| | || || Sbjct 59176 AAATGTAAAGGCCAAGATCCAGAATAAGAAAGGAATTCCTCCTGATCAGCAAAGACTGAT 59235 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 ||||| || ||||| || || ||| | ||| | | ||||| || | |||||||| Sbjct 59236 CTTTGCCGGCAAGCAGCTGGAAAATGGACATACTTTGTCCGACTACAACATTCAAAAGGA 59295 Query 27597 ATCCACTCTTCATCT 27611 | |||||||||||| Sbjct 59296 GTTCACTCTTCATCT 59310 >seq15361 Length=270988 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | |||||||| || ||||| ||||| ||||||||| | ||||| | || || Sbjct 66059 AAATGTAAAGGCTAAGATCCAGGATAAGGAAATAATTCCTCCTCATCAGCAAAGACTGAT 66000 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| ||||| || || ||| | ||| | | ||| | || |||||||| Sbjct 65999 CTTTGCTGGCAAGCAGCTGGAAGATAGACATACTTTGTCTGACAAGAACACTCAAAAGGA 65940 Query 27597 ATCCACTCTTCATCT 27611 |||||||||||||| Sbjct 65939 GTCCACTCTTCATCT 65925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569735313250400