Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq12799 104 3e-17 >seq12799 Length=317942 Score = 104 bits (114), Expect = 3e-17 Identities = 258/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 ||| |||| |||||| || ||||||| |||||||| || || || || || ||| Sbjct 43151 TATATCGTAGAGCCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTG 43210 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 | || ||||| || || ||||| || | ||||||||||||||||| || ||||| Sbjct 43211 GTTCATCACAAAATTGAAATGTTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAAT 43270 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCG 13835 |||| ||| | ||||||||| || || || || | | | || || || Sbjct 43271 TTCTATTGCATTCACGTGGACAAAAAATC---AGAGGATTCCTTTTTGGCTGCAGTGATT 43327 Query 13836 GCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTAC 13895 | ||| || || ||| |||| | ||||| | |||| | ||||||||| Sbjct 43328 GGCATTGCATCCTGTTTCAGTAACATCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTAC 43387 Query 13896 GGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGA-CGCCTCCCC 13954 | || |||||||| || ||||| ||||||| ||| ||| |||||| | | | Sbjct 43388 GCATCATGGAGTCGGGTTCAGGCTGACCTCAACTGTATGCAGGACCTCTATAGAAT---G 43444 Query 13955 CGT-CA-AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAAC 14012 || || | |||| |||| || |||| || ||||| ||||| || || | || |||||| Sbjct 43445 AGTGCAGACTGGAAGTACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAAACCAAC 43504 Query 14013 CTGGAGATCGTGCGGGCGCTGAAG 14036 ||||| || || || ||| ||| Sbjct 43505 CTGGAAATTGTCAGGAAGCTCAAG 43528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658074943859200