Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq61401 150 4e-32 >seq61401 Length=4951 Score = 150 bits (166), Expect = 4e-32 Identities = 420/641 (66%), Gaps = 15/641 (2%) Strand=Plus/Plus Query 20207 ACCTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGAA 20266 |||||||||||||| || || | || ||| || || || | |||||| | || || Sbjct 1886 ACCTATTTCTCCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGAC 1945 Query 20267 CTGTTCAACCGGGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTCAGTCATAAC 20326 | |||||||| || ||||| | | ||| | || | | ||||| || || Sbjct 1946 CATTTCAACCGCGGCCGCGCTA---AGGTCGATCATCTGCACCTGGACGTAGCACACAAG 2002 Query 20327 GCCCTTGCCGGAGGTCTTCTCTGTGCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAG 20386 || || || | || | || || | ||| | |||||||| ||||| || || | || Sbjct 2003 GCGCTCGCACGCGGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAA 2062 Query 20387 GACGCCCTGAAAGGCGGCTGCACGCTGTTCGACATTGAGCAGCTCAAACGTGAAAACAGC 20446 ||||| | |||||| |||| |||||||| ||| |||| | || ||||| Sbjct 2063 GACGCGGTTGCAGGCGGTTGCAACCTGTTCGATCTTGCCGAGCTGGGGCTCGAGTACAGC 2122 Query 20447 GCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTC 20506 |||| || | | |||||||| |||||| | || ||||||||| ||| ||| | ||| Sbjct 2123 CCCGAGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTC 2182 Query 20507 CCGTTCGAGGAGCTGCAACGTTGCATGGTCGACACGCTGGAAGAATGGGAAGACTATGCG 20566 ||| ||| || |||| || |||||||| || || ||| | ||||||||| | Sbjct 2183 CCGCTCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACGGGAAGACTTCAAG 2242 Query 20567 CCGTTTGCCGCAAATCCGTTCGGCTCCCGCCCGGTATGGATTGGTTACGACC---CGTCA 20623 || | || | || |||| | ||| || |||||| | || || |||| ||| | Sbjct 2243 CCCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGACCCAGCGTTA 2302 Query 20624 CACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAA 20683 || |||||| ||||| | || |||| || |||| |||| |||||||||| Sbjct 2303 TAC---GGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAG 2359 Query 20684 TTCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCC 20743 || | | || | | || ||| ||||||||||| | ||||||| || | Sbjct 2360 TTTCGCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGCA 2419 Query 20744 ATC---CGCAAACTCACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGC 20800 ||| |||| |||| | | | ||||| |||||||| | ||| || | |||||| Sbjct 2420 ATCAGGCGCA---TCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACCGGC 2476 Query 20801 CTCGGTGTCGGCGTGTTCCAGCTCGTGCGCTCGTTCTATCC 20841 |||| | || | ||||||||| ||| ||||||||| Sbjct 2477 ATCGGCCAGGATGTCTACCAGCTCGTTCGCCAGTTCTATCC 2517 Score = 109 bits (120), Expect = 1e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 21632 TGGAGCCGGATATCAATCAGGAGCTGTACGGCCTGCCGGAATATCTCAGCGCCCTTAACT 21691 |||| || ||||||||||||||| |||| |||||||| ||||||||| |||| || || Sbjct 3330 TGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCTCGGCGCGCTGCACG 3389 Query 21692 CTGCCTGGCTGAATGAGTCGGCCACGCTGTTCCGCCGCAAGTATTACGAAAACGGCGCTC 21751 | || ||| |||| |||||||| |||||||| || || || || || |||| | | | Sbjct 3390 CGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTATGAGAACGACTCGC 3449 Query 21752 ATGCCGGATACATCATGTATGTCACCGATGCCGTGCAG 21789 | ||||| | ||| |||| | || || || | |||| Sbjct 3450 ACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAG 3487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104338352581980