Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq61401 163 5e-36 >seq61401 Length=4951 Score = 163 bits (180), Expect = 5e-36 Identities = 425/643 (66%), Gaps = 19/643 (3%) Strand=Plus/Minus Query 8653 GGATAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCG 8712 ||||||||| ||||||||||||| | || | |||| |||||| | || || | Sbjct 2517 GGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGCC 2458 Query 8713 ATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCG---GATGGATTCAGCCTGGGTGGCA 8769 |||||||| |||||| | | | |||| |||| ||| | || ||||||| | Sbjct 2457 ATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTTCG 2401 Query 8770 AAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACC 8829 ||||||||||| ||| || | | || | | || |||||||||| |||| || Sbjct 2400 AAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCC 2341 Query 8830 GGCGGTGCCAGCACCACGCATCCGGCACTGTCGCCACGGTGTGACG---GGTCGTAACCA 8886 || || |||| ||| | ||||| |||||| || | ||| |||| || || Sbjct 2340 GGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC---GTATAACGCTGGGTCATAGCCC 2284 Query 8887 ATCCAGACCGGGCGGGAGCCGAACGGATTCGCGGCAAACGGCGCAT--AGTCTTCCCATT 8944 | ||| || || ||| | |||| || || ||| || || | ||||||||| | Sbjct 2283 ACCCATACAGGTCGGTATGCGAAAGGG--CGGGGCGCCAGGGGCTTGAAGTCTTCCCGTA 2226 Query 8945 CTTCCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGT 9004 ||| || || ||||||||||| |||| || ||| |||||| | ||| ||| ||| Sbjct 2225 GCTCCCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGT 2166 Query 9005 CGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAA 9064 |||||| || | |||||| |||||||| | | || |||| ||||| ||| | | Sbjct 2165 CGTCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCA 2106 Query 9065 GCTGCTCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCT 9124 ||| ||| |||||||| |||| || ||| | ||||| || | || || |||| Sbjct 2105 GCTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCT 2046 Query 9125 GCCGCCACTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGA 9184 | |||||||| | ||| | || || | || | || || || || || ||||| | Sbjct 2045 GGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCA 1986 Query 9185 TTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACG 9244 | || | | || | | ||||| || |||||||| | || || | |||||| | Sbjct 1985 GGTGCA---GATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATG 1929 Query 9245 GGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGT 9287 || || || ||| || | || || |||||||||||||| Sbjct 1928 AATACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGT 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93347291633460