Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq61401 194 3e-45 >seq61401 Length=4951 Score = 194 bits (214), Expect = 3e-45 Identities = 468/700 (67%), Gaps = 15/700 (2%) Strand=Plus/Minus Query 1540 CGGGTAGAATGAGCGCACCAACTGGAATACACCGAGACCGAGGCCTGTTGCGTCAATGCC 1599 ||| ||||| ||| || | |||| | ||| | | |||| ||| || | ||| || | Sbjct 2518 CGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGC 2459 Query 1600 GATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGGCTTCTGCCTGCGCGGCAAA 1659 |||||||| |||||| | | || |||| | | ||| || || ||||| || | || Sbjct 2458 CATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGGGCTTCGAA 2399 Query 1660 GTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGG 1719 ||||||||| ||| || | | ||||| ||||||||||||||| | ||| |||| Sbjct 2398 GTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCCGG 2339 Query 1720 CGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCAATCCA 1779 ||||| | || | ||||| ||||||| | ||||| ||||| | ||| Sbjct 2338 GGGCGCCACCACAATCAGGCCGGCCGAGTCGCCGTATAACGCTGGGTCATAGCCCACCCA 2279 Query 1780 GACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGC--GAAGTCCTCCCATGTTTCC 1837 || || || | |||| || || |||| ||||| |||||| |||| | ||| Sbjct 2278 TACAGGTCGGTATGCGAAAGGGCGG--GGCGCCAGGGGCTTGAAGTCTTCCCGTAGCTCC 2221 Query 1838 ATCACG--TCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGT 1895 |||| || |||||||||||||||| || ||| |||||| | ||||||| | |||| Sbjct 2220 --CACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCGT 2163 Query 1896 CGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCT 1955 | | || | ||||| ||||||||| | | ||||| |||| ||| | | |||| Sbjct 2162 CAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGCT 2103 Query 1956 GGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCC 2015 | | || ||||||||| |||| || || |||| ||||| || | || || ||||| | Sbjct 2102 CGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGGC 2043 Query 2016 GCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTT 2075 ||||||| | || ||||||| | || | |||||||| |||| | ||| | Sbjct 2042 GCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCA--- 1986 Query 2076 CGATGC-GGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGG 2134 | ||| | | | || | | ||||| || |||||| | ||||| | |||||| | Sbjct 1985 -GGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAA 1927 Query 2135 TAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGC-GCAGATGCTTTTG 2193 || || | ||| || | || || || || || || ||| | || ||| | || Sbjct 1926 TACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCACTTGC-TATG 1868 Query 2194 CGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAA 2233 | |||||||||||||| || ||| ||| || ||||| Sbjct 1867 CATCGCCATGCCCGATGCAACCTTGTTCAGTTTGCGAAAA 1828 Score = 168 bits (186), Expect = 1e-37 Identities = 292/418 (70%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 361 CGCCCATGAGCTGGAACGGTACGCGGTGTGCATCCATCAGGTCGGCGGCGC-TGGCTTTC 419 |||| || || || ||||||||| ||||| | | ||||||| | ||| | | ||| Sbjct 3707 CGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGTCGTCT-CGCGTCACGTTC 3649 Query 420 TTGATGTTGAAAAAGTCATCCTTTGTGGCGACTTCGCTCAATGGCACGATTTTGATGCCG 479 |||||||| ||||| || ||||| | | ||| ||| || || | | | || || Sbjct 3648 TTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACACCGGGATTAGCTGAATTCCT 3589 Query 480 TCCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGAG-CCCTTTCGA 538 ||| ||| ||| || ||||| | |||||||| |||||||| | ||||| | | Sbjct 3588 TCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGAAGTTGCCCGGTCCCTTGCTA 3529 Query 539 GTTACGCATCGCCTCGCGCAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCAGTCAC 598 || || ||||||||||| || || ||||| | ||||||| | ||| |||| Sbjct 3528 ATTTT-CAGCGCCTCGCGCAACGCGTCTACGTCTTCCTGTTTCTGCGCTGCGTCCGTCAT 3470 Query 599 ATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGC 658 |||| ||| | || ||||||| | |||||| || || || || ||||||||||| Sbjct 3469 GTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTAGCGACGACGAAACAGCGTCGC 3410 Query 659 GGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATCTC 718 || || |||| |||||| | | ||||||| ||||||||| |||||||| || | ||| Sbjct 3409 CGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGATATTCGGGCAGGCCATACACCTC 3350 Query 719 CTGATTAATATCAGGCTCCAGCAGGT---GGAACACGGTATCGGGTGCGAACTCATGC 773 |||||| ||||| || |||| | || || |||| | ||| ||||||||||| Sbjct 3349 CTGATTGATATCGGGTTCCATTAAGTTAAAGATCACG---CCCGGTTCGAACTCATGC 3295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94932971165300