Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5645 141 8e-29 >seq5645 Length=125407 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || || ||||| |||| ||||| |||||||| | |||| Sbjct 11876 GATCTTCCTCTCATGGCCCTACCTCCATGCCATGCCCTTTGCCAGTTCTACGTGGTGAAT 11935 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || || |||||||| | || ||||| ||| Sbjct 11936 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGTGTGCCCTTC 11995 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| |||||||| || || Sbjct 11996 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 12036 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 12036 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 11977 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || | || || ||||||||||||||||| |||||| | |||||||| ||| Sbjct 11976 ATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGG 11917 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||| || || || ||||| ||||| ||||| Sbjct 11916 CAAAGGGCATGGCATGGAGGTAGGGCCATGAGAGGAAGATC 11876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| | || || ||| ||| |||||||||||||| || | || || |||||||| Sbjct 9223 CCAACAAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAATGGATCCCGAGACTTCT 9282 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||| | ||||||| | | | || || || || || ||||| || || || || | Sbjct 9283 TGGACAGCCTGGGGTTCTCCACAAGAGAAGAAGGGGATTTAGGCCCAGTTTATGGCTTTC 9342 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||||||||| || || Sbjct 9343 AGTGGAGGCACTTTGGGGCAGAATA 9367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || ||||||||||| |||||||| || || || || ||||| || || || || || Sbjct 9367 TATTCTGCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 9308 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| |||||||| || || | || |||||||||||| Sbjct 9307 CTTGTGGAGAACCCCAGGCTGTCCAAGAAGTCTCGGGATCCATTGGCATCCCAGATCTTC 9248 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| ||| || || | |||| Sbjct 9247 ACTCCCTTGGAAGACAGTTTGTTGG 9223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447810383402400