Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq257 174 1e-38 seq27378 118 9e-22 seq5645 95.1 1e-14 seq5310 82.4 6e-11 >seq257 Length=475938 Score = 174 bits (192), Expect = 1e-38 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || ||||| | ||||| || ||||| ||| | | || ||||| ||||||||| Sbjct 92377 CCCCACGAAGTCCTGATTGTGACGTGGCAGAAAATCAGGGCTGTGAGCCCGGAAAACATG 92436 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 | ||| || || || |||| |||||||| | ||||| || || | || || ||||| Sbjct 92437 GTCACCTTCAGCAAGAACCATGGGGTTGTGCTCCAGCCTGCCTATGAGGACAAGGTGAAC 92496 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || ||||| ||||| || ||| |||| || ||||||||||| || || |||||||| Sbjct 92497 ATCACCGAGCTGGGACTCCATAACTCAACCATTACCTTCTGGAATACCACCCTGGATGAT 92556 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || || || |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 92557 GAGGGCTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 92616 Query 1515 TGTCTAACCCTTTTTG 1530 || || ||||||| || Sbjct 92617 TGCCTCACCCTTTCTG 92632 >seq27378 Length=557180 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 236381 GTGGTGGAAGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 236322 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || ||||| Sbjct 236321 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAT 236262 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 236261 ATCGCCCTGTGGATGACTGA 236242 >seq5645 Length=125407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 12048 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 11989 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| |||||||| |||| |||||||||| ||||| || ||||| || || | Sbjct 11988 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 11929 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || |||||||| || ||||| Sbjct 11928 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATG 11887 >seq5310 Length=121450 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||||||||| || ||||| | ||||| | Sbjct 17604 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCCCTTCC--TGAAAAGAATC 17661 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAA 2366 | ||||| || |||||||| || | |||||||||||| | || || Sbjct 17662 GACCTTTAAAGAACAGAATTAACATAGTTCTCAGTAGAGAACTCAA 17707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414069300657880