Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq25256 125 2e-23 seq14784 122 2e-22 seq15362 116 9e-21 seq2137 109 1e-18 seq26811 107 4e-18 seq15361 102 2e-16 seq9362 102 2e-16 seq353 100 7e-16 seq209 91.5 3e-13 >seq25256 Length=205224 Score = 125 bits (138), Expect = 2e-23 Identities = 166/233 (71%), Gaps = 18/233 (8%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | || || | ||||| Sbjct 40937 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 40878 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGC-------GT-----------TGTTGGTCAGGA 211004 |||||||||||||| || ||||| || | || || ||||| ||| Sbjct 40877 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGA 40818 Query 211005 GGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCA 211064 || | ||||| || ||||||||||| |||||||| |||||||| || | || Sbjct 40817 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 40758 Query 211065 ACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| || ||||| ||||| || || | ||||||||| Sbjct 40757 ACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 40705 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | || || | ||||| Sbjct 45228 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 45169 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||||||| | || ||||| ||||| | ||||| || ||| Sbjct 45168 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 45109 Query 211023 TGGATCTT 211030 |||||||| Sbjct 45108 TGGATCTT 45101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||||| || ||||||||||| |||||||| |||||||| Sbjct 41317 TGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTA 41258 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || | || ||||| || ||||| ||||| || ||||| ||||| || || | |||| Sbjct 41257 TCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGC 41198 Query 211113 AT 211114 || Sbjct 41197 AT 41196 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || |||||||| || ||||| ||||| | || || | ||||| Sbjct 45463 AGCACAAGGTGCAGGGTCGACTCTTTCTGTATGTTGTAATCAGAGAGTGTGCGGCCATCC 45404 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| || | || ||||| ||||| Sbjct 45403 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGG 45360 >seq14784 Length=15745 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| | |||||||| |||||||| || || | || || ||||||| Sbjct 8634 AGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATCT 8693 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || || | || || ||||| Sbjct 8694 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 8753 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 8754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 8813 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | || | ||||| ||||| | |||||| Sbjct 8814 TTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8845 >seq15362 Length=836705 Score = 116 bits (128), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | | ||| |||| ||| ||||| ||||| ||||| || || | | || Sbjct 451502 ACAAAGTCTGAATATAAGATGAAAAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 451561 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT----TGGTCAGGAGGAA 211008 |||||||||||||| ||||| || ||||| || | | | || |||||||||| Sbjct 451562 ATGTCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTCAGGAGGAA 451621 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||| |||| ||||| ||| || ||||| | || || || |||||||| Sbjct 451622 TTCCTTCCTTAACCTGAATCTTGGTTTTTACATTTTCTGTTGTATCCAAGGGTTCAACCT 451681 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||| |||| || || || || | || | |||||| || Sbjct 451682 TGAGAGTGACGGTC-TTCCGGTAAGGGTTTTCATGAAAATCTGCATCTT 451729 >seq2137 Length=523945 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | |||||||| || |||||||| || || | || || | ||||||| Sbjct 114420 AGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 114479 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || || | || |||||||| Sbjct 114480 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 114539 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || ||||| |||||||||||| Sbjct 114540 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCA 114572 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||||||||||| || || ||||| | | || ||||| || || | || || || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || |||||||| || || || |||||||||||| | || ||||| || ||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || | || ||||| || | ||||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 >seq26811 Length=67355 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| ||||||||| |||| ||||| ||||| || || | | || ||||| ||||| Sbjct 59312 CAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCGGACAAAGTATGTCCATTTTCCA 59253 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||||| || ||||| || | ||| || |||||||||| ||||| ||| | ||||| Sbjct 59252 GCTGCTTGCCGGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTTCTTATTCTGGA 59193 Query 211027 TCTT 211030 |||| Sbjct 59192 TCTT 59189 >seq15361 Length=270988 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 || |||| || | ||| |||||||||||||| ||||| |||| | || | | || Sbjct 65911 GATGTCTCAGTATAAGATGAAGAGTGGACTCCTTTTGAGTGTTCTTGTCAGACAAAGTAT 65970 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 || |||||||||||||||||| || ||||| || | ||| || | |||||||| | || Sbjct 65971 GTCTATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTATTT 66030 Query 211015 CCTTGTCCTGGATCTT 211030 |||| ||||||||||| Sbjct 66031 CCTTATCCTGGATCTT 66046 >seq9362 Length=45889 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | ||||| |||||||||||||| | || ||||| | || | || Sbjct 23848 ACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGT 23789 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| | | | ||||| || | ||| || | ||||| || ||| Sbjct 23788 ACATCCATCTTGCAGCTGCTGGACAGGAAAGATTAGTCTTTGCTGATTAGGAGAAATTCC 23729 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| | ||||||||| || || ||||| || || || | ||||| ||| | Sbjct 23728 TTCCTTATGCTGGATCTTGGCCTTTACATTTTCTATTGTATCTAAAGGTTCAATCTCAAA 23669 Query 211073 AGTGATCGTCTTTCCCGTGAG 211093 ||| || ||||| || || || Sbjct 23668 AGTAATGGTCTTCCCTGTAAG 23648 >seq353 Length=562904 Score = 100 bits (110), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || || ||| | |||||||||||| ||||| ||||| ||||| || || | | || Sbjct 101321 ACAAAATCTCAACACAAGGTGAAGAACAGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 101380 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||||| | || || | | || | |||| ||||| ||| Sbjct 101381 ACAGCCATCTTCCAGTTGCTTGCCAGTAAACATTACTC--TGCTCATCAGTAGGAATTCC 101438 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| | || || || |||||||| ||| Sbjct 101439 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCCAGGGTTCAACCTTGAG 101498 Query 211073 AGTG 211076 |||| Sbjct 101499 AGTG 101502 >seq209 Length=76019 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGGTCCT 210955 ||||||| |||||||||||||||| || ||||| ||| | || || | ||| | Sbjct 73810 AGTCTTAACACAAGGTGAAGAGTGGGCTTCTTTTGAATGCTGTAGTCAGACAA--TTATG 73753 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| |||| ||| |||||||| || |||| || | ||| | || |||| |||||| Sbjct 73752 TCCCTCTTTCAGTTGCTTGCCAGCAAAGACCAGTCCTTGCT-ATCTTCTGGAATTCCTTC 73694 Query 211016 CTTGTCCTGGATCTT--TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||| ||||||||||| | || || |||| || || || || ||||||||| | || Sbjct 73693 CTTATCCTGGATCTTGGTCCTTACA-TTTTTTTATTGTATCTGATGTTTCAACCTTGGGA 73635 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| || |||| | || | |||||||| | || ||| || Sbjct 73634 ATGATGGT-GTTCCTCTAAGGGATTTTACAAAAATCTACATCTT 73592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157953918604550