Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2137 102 2e-16 seq4457 100 7e-16 seq14784 98.7 2e-15 seq1318 96.9 8e-15 seq333 95.1 3e-14 seq15752 91.5 4e-13 seq6964 87.8 4e-12 >seq2137 Length=523945 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| ||||||||||| || ||||| | | || ||||| || || || || || || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||||||||| ||| ||| ||||||||||| || ||||| || | ||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| ||||||| ||| | |||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | ||||| || || |||| ||||| || | || ||| | |||||| Sbjct 114420 AGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 114479 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| | | || ||||| || || || || ||||||||| Sbjct 114480 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 114539 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||| || ||||||||||| Sbjct 114540 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC 114571 >seq4457 Length=62571 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||| |||||||||||||||||||||| ||||||| | ||||||||| ||||| | Sbjct 48249 ATACTTCATGATGACCAAAAAATCAGAATAAGTGTTGATGTAAGATAGGATCCCCTCCTC 48308 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | || ||||||||| | ||||| | ||| | | | ||||||| Sbjct 48309 CGGCAGGGTCAAAAAAGGTTGTATTTAGATTGCGACCTGTTAAAA 48353 >seq14784 Length=15745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | | ||| |||| |||| ||||| || | || ||| |||||| Sbjct 8634 AGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATCT 8693 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| | | || ||||| || || || || || |||||| Sbjct 8694 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 8753 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || || || || | ||||| ||| Sbjct 8754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 8813 Query 225682 TTGCCCGTCAAAGTTTT 225698 || | ||||| || || Sbjct 8814 TTACTGGTCAAGGTCTT 8830 >seq1318 Length=8464 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||||||||||||||||||||| || | |||||| | ||||||||| ||||| | Sbjct 6237 ATACTTCAGGATGACCAAAAAATCAGAACAAGTATTGATATAAGATAGGATCTCCTCCTC 6178 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | | ||||||||| | ||||| | ||| | ||| ||||| Sbjct 6177 CGGCAGAGTCAAAAAAGGTTGTATTTAGATTGCGATCTGTTAA 6135 >seq333 Length=817791 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || || || |||||||| || || |||||||| |||||||| |||||| Sbjct 599545 TGTCCATCAGTGATGGAAATGACATTTGTCGGAATGTAAGCAGACACATCACCAGCTTGT 599486 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || ||||| || || | || |||||||||||| Sbjct 599485 GTTTCTATGACTGGTAAAGCAGTCAAAGAGCCACCACCAAAA 599444 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| || || || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 599113 CACTTCAGTATCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 599172 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | || |||||||| |||||||| || || ||| ||||| |||| Sbjct 599173 GCAAGCATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 599218 >seq15752 Length=134248 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||||||||| |||||||| |||||||| || ||| | | Sbjct 87651 ATACTTCAGGATGTCCAAAAAATCAGAATAAGTGTTGATATAGGATAGGGTCTCCTTCTC 87592 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | | || |||||| | || || | ||| | ||| ||||||| Sbjct 87591 CAGCAGAGTCGAAAAAGGTTGTGTTTAGATTGCGATCCGTTAAAA 87547 >seq6964 Length=346276 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| |||||||||||||||| ||||| || |||||||| || ||||| | Sbjct 289609 ATACTTCGGGATGCCCAAAAAATCAGAATAGGTGTTGGTATAGGATAGGGTCTCCTCCTC 289668 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | |||||||||||| | || || | ||| | ||| || || Sbjct 289669 CAGCAGGATCAAAAAAGGTCGTGTTTACATTGCGATCTGTCAA 289711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191298618384980