Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4223 244 9e-60 seq1865 98.7 8e-16 seq1414 84.2 2e-11 >seq4223 Length=550205 Score = 244 bits (270), Expect = 9e-60 Identities = 562/840 (67%), Gaps = 16/840 (2%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || |||| | || ||| | |||||||| ||||| Sbjct 266930 TACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAA 266871 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | | || || | | | || | | | | || ||| || || Sbjct 266870 AGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCAC 266811 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 |||||| |||||||| |||| | || || | ||| | | | || || | || Sbjct 266810 AAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGC 266751 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | ||| | || || |||||||| | || | | |||| || ||||| | | | | Sbjct 266750 CTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCTG 266691 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | | ||||| | || | || | |||| | || ||||| ||||| || ||||| Sbjct 266690 CTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACC 266631 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 | ||||||||||| ||||| || ||||| || | || |||| | ||| || || Sbjct 266630 TATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTT 266571 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 ||||| ||||| ||||| || |||||| | | ||||| |||| ||||| || Sbjct 266570 GAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTCCTTCCACGGTAGCAAAGGC 266516 Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 ||| | || || | | ||| |||||||| |||||| || ||||| | | Sbjct 266515 TACCACACGTTCTCCACAGGTAGCCT-CTTTGTCTCCAATCCAAGGCAAAGCCCAATCTG 266457 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAA 4806 | || ||||| || || || || | | || || || || | ||||||||| || Sbjct 266456 CCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTT--- 266400 Query 4807 ATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 ||| ||| | ||| |||||||| || || || ||||||||||||||| |||| ||||| Sbjct 266399 -TGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCC 266341 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 || ||||| || || | || || || | |||||||| | |||||||| | | ||| Sbjct 266340 ATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAAC 266281 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | || || |||||||| |||||||| || ||||| | |||||| || |||| ||||||| Sbjct 266280 CGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGA 266221 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 |||||||| ||| || ||| ||| || || |||||| | | | |||| | | Sbjct 266220 GATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATGTTCTTAGAGAGA 266161 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 | || || ||| | | |||||| || || ||| ||| || ||||| |||||||||| Sbjct 266160 -CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCA 266102 >seq1865 Length=140298 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 110710 Query 4692 AC 4693 || Sbjct 110709 AC 110708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| |||||||| |||||||| || ||||| |||||||| || |||| ||| |||||||| Sbjct 108123 TACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACGTGAGATAT 108064 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||| || || |||||||| || || |||||| | | ||||||| Sbjct 108063 AAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCTTTAG 108014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | ||| |||||||| || || || |||||||||||||||||||| ||||| || || Sbjct 108848 GTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 108789 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| || || || || || || | |||||||| | || ||||| Sbjct 108788 AATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTC 108744 >seq1414 Length=619926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || |||||||||||||| || || || | Sbjct 504653 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAGAAAGCTAAGA 504597 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| |||||||| | || || | ||||| || |||||||| || | ||| || | Sbjct 504596 TGTGAGAGATAAAGTATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 504537 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 504536 ATAAGTCAAC 504527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426629739513110