Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4223 325 5e-84 seq56286 132 7e-26 seq1865 120 4e-22 seq1414 87.8 2e-12 >seq4223 Length=550205 Score = 325 bits (360), Expect = 5e-84 Identities = 630/922 (68%), Gaps = 17/922 (2%) Strand=Plus/Minus Query 47790 GTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 ||||| ||| |||||| |||| || | |||| ||| ||| | | |||| ||| | Sbjct 267008 GTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGC 266949 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | | || | ||| || | ||||| || || ||||| || |||||| || || Sbjct 266948 CATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGAT 266889 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 | | |||||||| ||||| ||||| || | || ||| || |||| | | || Sbjct 266888 AGTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAG 266829 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| ||||| || ||||| ||||| ||||| | |||||||| || | Sbjct 266828 CATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGT 266769 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || ||||| | ||||| || || || || ||||| || | |||| || | || Sbjct 266768 GAGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGAT 266709 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 || | | || | | ||| ||| | | || ||||| ||||| | || || Sbjct 266708 GATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGC 266649 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| ||||| || | |||| |||||| ||||| | ||| || |||||||||||||| || Sbjct 266648 AAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGG 266589 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 || ||||| |||| |||||||| ||||| || ||||| |||||| | | || Sbjct 266588 CACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTCC 266534 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| |||| ||||| || | | ||||| | | || || |||| | ||||| Sbjct 266533 TTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCA 266474 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | |||||||| ||||||||||||||||||||||| | || || ||||| ||||| Sbjct 266473 AGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAG 266414 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| || |||| ||| || |||| |||||| || || | |||||||||||||| || Sbjct 266413 AAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGA 266354 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 | || ||||| || || || || || | || ||||| | |||||||| ||||| || Sbjct 266353 ACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAAC 266294 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | ||| || || |||| || ||||||||||| |||||||| | ||||| || Sbjct 266293 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAA 266234 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG-TC-AGTTTATTCCAGTCATTG 48620 || | ||||| |||||||| | || | ||| || || | ||||| | Sbjct 266233 AGCCAGAACATGAGATATAAAATACCTCTCCT--CAAGCTCTAGGGCTTCCCAGTGCTGA 266176 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 || | || || | | | || || ||||||| |||||| || ||||| ||| |||||| Sbjct 266175 ATGTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATAC 266117 Query 48681 ATATTCCATATATCACTGTATT 48702 || | ||| |||||| ||||| Sbjct 266116 ATCTGCCAAATATCATGGTATT 266095 >seq56286 Length=35121 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | ||| Sbjct 10522 TGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATAGAC 10581 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 10582 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 10641 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 10642 TTTCTTATACCAT 10654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || || ||||| || || Sbjct 25584 AGTACCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCGGAAAGAAGGTT 25643 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||||||||| | || || | || ||||| || || | || | |||||| Sbjct 25644 ATATGTTTCAATAGCAGCATCAATACCTTCTTTGTGAATCCCCACAGAAACCCTCATCAA 25703 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||||||| || Sbjct 25704 CATATGCTGTGGTCTTTCAGCC 25725 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || || || | | | ||| Sbjct 18975 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 19034 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || ||||||| || Sbjct 19035 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19094 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 19095 TCCAGGTAAATAGCAAATGCCCCAGGTCG 19123 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| || |||||||| || Sbjct 18542 ATATAGCTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACA 18601 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 18602 CATCAAAGACCAGTC 18616 >seq1865 Length=140298 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || |||||||||||||| ||||| ||||| ||||| ||| Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGC 110711 >seq1414 Length=619926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| ||||| Sbjct 500838 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGG 500779 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 500778 GTACTGGATTGGAAAGATGACAAATC 500753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693968313348800