Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4223 307 2e-78 seq56286 136 6e-27 seq1865 113 6e-20 seq1414 111 2e-19 >seq4223 Length=550205 Score = 307 bits (340), Expect = 2e-78 Identities = 639/941 (68%), Gaps = 19/941 (2%) Strand=Plus/Minus Query 46280 TTCT-TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCC 46335 |||| ||| ||||| |||| || | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 46336 ATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 46395 || | | ||| | |||||| | ||||| || || ||||| || |||||| || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 46396 TTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAA 46455 | |||||||| ||||| ||||| || || ||| || |||| | | || Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGC 266828 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 || ||||| ||||| || ||||| |||||| ||||| | |||||||| || || Sbjct 266827 ATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTG 266768 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT-AT 46574 || || || || | ||||| || || || || ||||| || | |||| || ||| || Sbjct 266767 AGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATT-GATGAT 266709 Query 46575 TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 || | | ||| | | ||| ||| || | || ||||| ||||| | || || Sbjct 266708 GATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGC 266649 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| ||||| || | ||| |||||| ||||| | ||| || ||||||||||| ||||| Sbjct 266648 AAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGG 266589 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 || ||||| | || |||||||| ||||| || ||||| |||||| | | || Sbjct 266588 CACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTCC 266534 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCA 46811 ||| || | || || || || | | ||||| | | || || || | |||||| Sbjct 266533 TTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCA 266474 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||||||||| ||||| ||||||||||||||||| | || || ||||| ||||| Sbjct 266473 AGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAG 266414 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 ||| || |||| | || |||| || || || || | |||||||||||||| || Sbjct 266413 AAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGA 266354 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 | | |||||||| || || || || || | || ||||| | ||||| |||||||| || Sbjct 266353 ACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAAC 266294 Query 46992 CTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 ||| | ||| || || ||| || ||||| ||||| |||||||| | ||||| || Sbjct 266293 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAA 266234 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TC-AGTTTATTCCAGTCATTG 47109 |||| ||||| |||||||| | || || || || || | ||||| | Sbjct 266233 AGCCAGAACATGAGATATAAAATACCTCTCCTC--AAGCTCTAGGGCTTCCCAGTGCTGA 266176 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 || | || || | | | || || ||||||| ||| || || ||||| ||| |||||| Sbjct 266175 ATGTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATAC 266117 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || | ||| |||||| | |||| | | ||| || ||||| Sbjct 266116 ATCTGCCAAATATCATGGTATTCGGTAAAAAAGATGACAAA 266076 >seq56286 Length=35121 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | ||| Sbjct 10522 TGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATAGAC 10581 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 10582 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 10641 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 10642 TTTCTTATACCAT 10654 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 29842 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 29901 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | |||||| |||| || ||| |||| || || |||||||||| | Sbjct 29902 GCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 29961 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| |||||||| |||||||||| Sbjct 29962 TCCACAGTGGTGACCCCACTGTATAAGCCTTGAATTACTTTCATGG 30007 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| ||||| || ||||| || || ||||| || || Sbjct 25584 AGTACCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCGGAAAGAAGGTT 25643 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||||||| | || || ||| | || ||||| || |||| || | |||||| Sbjct 25644 ATATGTTTCAATAGCAGCATCAATACCTTCTTTGTGAATCCCCACAGAAACCCTCATCAA 25703 Query 77113 CATATGCTGAGGTCGTTC 77130 ||||||||| |||| ||| Sbjct 25704 CATATGCTGTGGTCTTTC 25721 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT- 76044 || ||||| || || || || || || || |||||||| ||||| || || | |||||| Sbjct 14444 GCCAGTTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 14503 Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104 || | || | || || |||| ||||||||||| | |||||||| |||||||| || Sbjct 14504 AATAACTGG-GCCTCTGGACTTTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAG 14562 Query 76105 TCCCTGAACTCCAATACCAATAGG 76128 || || || ||||| ||||| || Sbjct 14563 ACCTTGTACCCCAATTCCAATGGG 14586 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 18552 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 18611 Query 76580 CACTC 76584 || || Sbjct 18612 CAGTC 18616 >seq1865 Length=140298 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 110710 Query 46774 AC 46775 || Sbjct 110709 AC 110708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 46340 ||| ||||| |||| || | |||| ||| ||| | | ||||| |||||||| | Sbjct 112287 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCT 112228 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 112227 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTC 112168 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||||||||| Sbjct 112167 CATAAAGTCAAACGGATT 112150 >seq1414 Length=619926 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 513483 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 513424 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 513423 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACG 513364 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 513363 CCACCACTCTTTCCCC 513348 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| ||||||||||| ||||| ||||| | Sbjct 500838 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGG 500779 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 500778 GTACTGGATTGGAAAGATGACAAATC 500753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712215494774400