Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14784 98.7 2e-15 seq25256 87.8 4e-12 >seq14784 Length=15745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | |||| | ||||||| ||||||||||| || | | ||| ||||| Sbjct 8633 GAGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATC 8692 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || |||||||| ||||| | |||||||||||| | | ||| || || || || Sbjct 8693 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 8752 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 ||| || || |||||| |||| | | |||| ||| |||||| || || || || Sbjct 8753 TTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGAT 8809 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || | |||||||| |||| |||||| Sbjct 8810 GGTCTTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8845 >seq25256 Length=205224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || |||||||| |||||||||||||| | | ||| Sbjct 45238 CCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGT 45179 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || |||||||||||||||||||| | | ||| || Sbjct 45178 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCC 45119 Query 152003 TTCCTTTTCTTGAATTTT 152020 ||| || || || || || Sbjct 45118 TTCTTTATCCTGGATCTT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152628228849570