Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14784 141 2e-28 seq2137 122 2e-22 seq15141 98.7 2e-15 seq39364 89.7 1e-12 seq29914 89.7 1e-12 seq20081 89.7 1e-12 seq17177 84.2 5e-11 >seq14784 Length=15745 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || ||| || |||| || || | | |||| |||||||||||||||| Sbjct 8618 ACCTCCCCTCAAGCGGAGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGA 8677 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||| | ||||| || || || ||||||||||||||||| | || ||||| || Sbjct 8678 CAGAGTGTGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 8737 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| |||||||||||||| || || || | ||||| ||||| | || || Sbjct 8738 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTAC 8797 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||| ||||| ||||| || || |||||||| Sbjct 8798 CTCCAGGGTGATGGTCTTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8845 >seq2137 Length=523945 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 || || |||| || || ||| || || |||||||||||||||| || ||||| ||| Sbjct 114417 CGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCA 114476 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || || || ||||||||||||||||| | || ||||| || || ||||||||| Sbjct 114477 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 114536 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 ||||||||||| || || ||| | ||||| ||||| Sbjct 114537 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 114571 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || || || ||||||||||||||||| | || ||||| || || ||||| || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||||||||| | || || | ||||| ||||| | || || || || ||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111 |||||||| ||||| || || ||||| ||||||||| || | || || Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATTGTCTTTTAAAA 116019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 125433 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 125375 >seq15141 Length=320023 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 261085 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 261027 >seq39364 Length=62976 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 10585 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 10643 >seq29914 Length=84768 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 32627 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 32569 >seq20081 Length=325320 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 209780 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 209838 >seq17177 Length=636452 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 |||||||||||||| || | ||| || ||||| ||| | || |||||| ||| ||| Sbjct 57412 GTGCGGCCATCCTCCAGCTTTTTGCCTGCAAAAGTCAGATACTGCTGGTCAGGCGGGATA 57471 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA--AGCTTCGACTT 283053 | |||||||||||||| || |||||| | | || | ||||| | | ||||| | Sbjct 57472 CTTTCCTTGTCTTGGATTTTGGCTTTTCCATTCTCAGTGGTGTCTCACTGGGCTCGACCT 57531 Query 283054 CGAGAGTGATCGTCTT--ACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| ||||| ||||| ||||| | ||||| || ||| ||||| Sbjct 57532 TGAGGGTGATGGTCTTGCACCCG--AGGGTCTTCACAAATGTCTGC 57575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045657306718180