Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4223 161 1e-34 seq45413 86.0 7e-12 seq14558 86.0 7e-12 >seq4223 Length=550205 Score = 161 bits (178), Expect = 1e-34 Identities = 311/459 (68%), Gaps = 5/459 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| |||| ||| ||| || ||||| | |||||| |||||||| | Sbjct 266653 CAGGCAAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGA 266594 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || |||| | |||| |||| || | ||| ||||| ||||| || || |||| Sbjct 266593 CCAGGCACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACC-----AGAAG 266539 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || || || || | |||||||| || | |||| ||| | || || | | || | Sbjct 266538 ATTCCTTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA 266479 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | ||||| |||||| |||||||| || | ||||| || || Sbjct 266478 ATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTG 266419 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 |||||||| | |||||| || | || || || ||||| || | |||||||||| Sbjct 266418 AAGAGAAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATT 266359 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 |||||| | || ||||| || ||||| || || |||| ||||| | ||||| | | Sbjct 266358 TCAGAACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATC 266299 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 ||||| || | ||| | | | || ||||| || || || |||||||| | ||| Sbjct 266298 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCA 266239 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 |||||||| ||||||| |||||||| || || ||| Sbjct 266238 AAGAAAGCCAGAACATGAGATATAAAATACCTCTCCTCA 266200 >seq45413 Length=37495 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| ||||||| Sbjct 32795 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 32736 Query 8465 AGCCACCACGCC 8476 ||||||||||| Sbjct 32735 CGCCACCACGCC 32724 >seq14558 Length=142006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| ||||||| Sbjct 38229 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 38170 Query 8465 AGCCACCACGCC 8476 ||||||||||| Sbjct 38169 CGCCACCACGCC 38158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520962144538000