Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq25256 102 6e-17 seq2137 98.7 7e-16 seq14784 95.1 9e-15 >seq25256 Length=205224 Score = 102 bits (112), Expect = 6e-17 Identities = 169/246 (69%), Gaps = 20/246 (8%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | ||| ||||| || || ||| || |||||||||||||| | | Sbjct 40952 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 40893 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| || | ||| Sbjct 40892 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGN 40833 Query 44231 ------------------ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 | ||||| || ||| ||||| ||||| |||| | || Sbjct 40832 NNCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC-GTTCTCGAT 40774 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 ||| ||| || |||||||||| || || ||||| || |||||||||||||||||||| Sbjct 40773 GGTATCGCTGGGCTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTCACGAAGAT 40714 Query 44332 TTGCAT 44337 ||||| Sbjct 40713 CTGCAT 40708 Score = 82.4 bits (90), Expect = 5e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 44215 CTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGG 44273 |||||| || | ||| | ||||| || ||| ||||| ||||| |||| | |||| Sbjct 41318 CTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGG 41260 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 | ||| || |||||||||| || || ||||| || |||||||||||||||||||| | Sbjct 41259 TATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCT 41200 Query 44334 GCAT 44337 |||| Sbjct 41199 GCAT 41196 >seq2137 Length=523945 Score = 98.7 bits (108), Expect = 7e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 ||||| || | || |||||||| || ||| |||||| ||||||||||| || | || Sbjct 115480 CCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGA 115539 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| |||| |||||||||||||||||||||||||| | |||||| |||| Sbjct 115540 GTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTG 115591 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||||||||||||||||||||||||| | |||||| |||| || | || || ||| Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || |||||| ||| | | | |||||||| || |||||||||| || || Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || |||||||| ||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCAT 116007 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| | ||| |||||| ||||||||||| || | || ||| |||| ||| Sbjct 114798 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCC 114857 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||||||||||||||||||||||| | |||||| |||| Sbjct 114858 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTG 114894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| | ||| |||||| ||||||||||| || | || ||| | || ||| Sbjct 114423 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 114482 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||||||||||||||| | |||||| |||| || | || ||||| || Sbjct 114483 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 114538 >seq14784 Length=15745 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| | | ||| | ||||||||||| || | || | | | || ||| Sbjct 8637 ACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATCTTCC 8696 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||||||||||||||| | |||||| |||| || | || || || || Sbjct 8697 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 8756 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| || || ||||||| || || ||||| Sbjct 8757 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTA 8816 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||||||||| ||||| |||||| Sbjct 8817 CTGGTCAAGGTCTTCACAAAGATCTGCATG 8846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359636469813390